Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_H01
(818 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18067|RAB7_CANFA Ras-related protein Rab-7 301 1e-81
sp|P51150|RAB7_MOUSE Ras-related protein Rab-7 >gi|1709999|... 300 2e-81
sp|P09527|RAB7_RAT Ras-related protein Rab-7 (RAS-related p... 300 2e-81
sp|O97572|RAB7_RABIT Ras-related protein Rab-7 290 3e-78
sp|P36411|RAB7_DICDI Ras-related protein Rab7 274 2e-73
sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7 270 5e-72
sp|O94655|YPT7_SCHPO Ras-related protein ypt7 257 2e-68
sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7 254 3e-67
sp|O24461|RAB7_PRUAR Ras-related protein Rab7 253 4e-67
sp|P31022|RAB7_PEA Ras-related protein Rab7 247 3e-65
>sp|P18067|RAB7_CANFA Ras-related protein Rab-7
Length = 207
Score = 301 bits (771), Expect = 1e-81
Identities = 145/207 (70%), Positives = 168/207 (81%), Gaps = 1/207 (0%)
Frame = +2
Query: 86 MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 265
M SR GDSGVGKTSLMNQ+VN+KF+NQYKATIGADFLTK+VMVDDR+VTMQ
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 266 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 445
IWDTAGQERFQSLGVAFYRGADCCVLV+DV PNTFKTLDSWRDEFLIQ+ PRDPE FPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 446 VVIGNKVDLESRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDV 625
VV+GNK+DLE+R V+ +RAQ WC SK +IPYFE SAKEA+NVEQAF +AR AL QE +V
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 626 DICSDFPTQIHLN-DDQHSNRQNRCGC 703
++ ++FP I L+ +D+ C C
Sbjct: 181 ELYNEFPEPIKLDKNDRAKTSAESCSC 207
>sp|P51150|RAB7_MOUSE Ras-related protein Rab-7
sp|P51149|RAB7_HUMAN Ras-related protein Rab-7
Length = 207
Score = 300 bits (769), Expect = 2e-81
Identities = 145/207 (70%), Positives = 168/207 (81%), Gaps = 1/207 (0%)
Frame = +2
Query: 86 MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 265
M SR GDSGVGKTSLMNQ+VN+KF+NQYKATIGADFLTK+VMVDDR+VTMQ
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 266 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 445
IWDTAGQERFQSLGVAFYRGADCCVLV+DV PNTFKTLDSWRDEFLIQ+ PRDPE FPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 446 VVIGNKVDLESRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDV 625
VV+GNK+DLE+R V+ +RAQ WC SK +IPYFE SAKEA+NVEQAF +AR AL QE +V
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 626 DICSDFPTQIHLN-DDQHSNRQNRCGC 703
++ ++FP I L+ +D+ C C
Sbjct: 181 ELYNEFPEPIKLDKNDRAKASAESCSC 207
>sp|P09527|RAB7_RAT Ras-related protein Rab-7 (RAS-related protein P23) (RAS-related
protein BRL-RAS)
Length = 207
Score = 300 bits (769), Expect = 2e-81
Identities = 144/207 (69%), Positives = 168/207 (81%), Gaps = 1/207 (0%)
Frame = +2
Query: 86 MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 265
M SR GDSGVGKTSLMNQ+VN+KF+NQYKATIGADFLTK+VMVDDR+VTMQ
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 266 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 445
IWDTAGQERFQSLGVAFYRGADCCVLV+DV PNTFKTLDSWRDEFLIQ+ PRDPE FPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 446 VVIGNKVDLESRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDV 625
VV+GNK+DLE+R V+ +RAQ WC SK +IPYFE SAKEA+NVEQAF +AR AL QE +V
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 626 DICSDFPTQIHLNDDQHSNRQ-NRCGC 703
++ ++FP I L+ ++ + C C
Sbjct: 181 ELYNEFPEPIKLDKNERAKASAESCSC 207
>sp|O97572|RAB7_RABIT Ras-related protein Rab-7
Length = 207
Score = 290 bits (742), Expect = 3e-78
Identities = 141/207 (68%), Positives = 165/207 (79%), Gaps = 1/207 (0%)
Frame = +2
Query: 86 MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 265
M SR GDSGVGKTSLMNQ+VN+KF+NQYKATIGADFLTK+VMVDDR+VTMQ
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 266 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 445
IWDTAGQERFQSL VAFYRGADCCVLV+DV PNTFKTLDSWR EFLIQ+ PRDPE FPF
Sbjct: 61 IWDTAGQERFQSLSVAFYRGADCCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPF 120
Query: 446 VVIGNKVDLESRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDV 625
VV+GNK+DLE+R V+ +RAQ W SK +IPYFE SAKEA+NVEQAF +AR AL QE +V
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWSYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 626 DICSDFPTQIHLN-DDQHSNRQNRCGC 703
++ ++FP + L+ +D+ C C
Sbjct: 181 ELYNEFPEPMKLDKNDRAKTSAESCSC 207
>sp|P36411|RAB7_DICDI Ras-related protein Rab7
Length = 203
Score = 274 bits (701), Expect = 2e-73
Identities = 136/205 (66%), Positives = 160/205 (78%), Gaps = 1/205 (0%)
Frame = +2
Query: 86 MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 265
MA++ GDSGVGKTSLMNQ+VN+KF+NQYKATIGADFLTK++MVDDRVVTMQ
Sbjct: 1 MATKKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQ 60
Query: 266 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 445
IWDTAGQERFQSLGVAFYRGADCCVL YDV + TF+ LDSWRDEFLIQ+GPRDP+ FPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPF 120
Query: 446 VVIGNKVDLES-RAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQEND 622
VV+GNK+DLE+ R VS +RA WCQSKG+IPYFE SAKEA+NVEQAF +AR A+ E+
Sbjct: 121 VVLGNKIDLENQRVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTIARNAIKLED- 179
Query: 623 VDICSDFPTQIHLNDDQHSNRQNRC 697
+ PT I + + + C
Sbjct: 180 -GLVFPIPTNIQVIPEPQPAKSGCC 203
>sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7
Length = 205
Score = 270 bits (689), Expect = 5e-72
Identities = 134/210 (63%), Positives = 159/210 (75%), Gaps = 4/210 (1%)
Frame = +2
Query: 86 MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 265
M+SR GDSGVGKTSLMNQ+VN+KF+ YKATIGADFLT++V+VDDR VTMQ
Sbjct: 1 MSSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSASYKATIGADFLTREVLVDDRQVTMQ 60
Query: 266 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 445
+WDTAGQERFQSLGVAFYRGADCCVLVYDV +F LDSWRDEFLIQ+ PRDP+ FPF
Sbjct: 61 LWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFDALDSWRDEFLIQASPRDPDNFPF 120
Query: 446 VVIGNKVDLE--SRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQEN 619
VV+GNK+D+E R +S +RA +CQSKG+IPYFE SAKEA+NVEQAF +AR AL QE
Sbjct: 121 VVLGNKIDMEESKRVISTKRAMTFCQSKGNIPYFETSAKEAINVEQAFEVIARNALMQEE 180
Query: 620 DVDICSDF--PTQIHLNDDQHSNRQNRCGC 703
+ DF P IH+ +D ++ C C
Sbjct: 181 SEEFSGDFQDPINIHIEND-----RDGCAC 205
>sp|O94655|YPT7_SCHPO Ras-related protein ypt7
Length = 205
Score = 257 bits (657), Expect = 2e-68
Identities = 126/208 (60%), Positives = 160/208 (76%), Gaps = 2/208 (0%)
Frame = +2
Query: 86 MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 265
MA + G+SGVGKTS+MNQ+VNRKF+ YKATIGADFLTK+V+VDD+VVT+Q
Sbjct: 1 MAGKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQ 60
Query: 266 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 445
+WDTAGQERFQSLGVAFYRGADCCVLVYDV +F+TLDSWRDEFLIQ+ P +PE FPF
Sbjct: 61 LWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPF 120
Query: 446 VVIGNKVDLE--SRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQEN 619
+++GNKVD+E R VS +A +CQ++G+IPYFE SAKEA+NV++AF VA+ AL +
Sbjct: 121 ILLGNKVDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALENMD 180
Query: 620 DVDICSDFPTQIHLNDDQHSNRQNRCGC 703
DI +DF IHL+ + +++ C C
Sbjct: 181 SDDIAADFTDPIHLDME---SQKTSCYC 205
>sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7
Length = 207
Score = 254 bits (648), Expect = 3e-67
Identities = 128/209 (61%), Positives = 152/209 (72%), Gaps = 3/209 (1%)
Frame = +2
Query: 86 MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 265
MASR GDSGVGKTSLMNQ+VNRKF+NQYKATIGADFLTK+V DDR+ T+Q
Sbjct: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQ 60
Query: 266 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 445
IWDTAGQERFQSLGVAFYRGADCCVLV+DV + +F L++WR+EFLIQ+ P DPE FPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
Query: 446 VVIGNKVDLE---SRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQE 616
VV+GNKVD++ SR VS ++A+ WC SKG+IPYFE SAKE NV+ AF +AR AL E
Sbjct: 121 VVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIARNALKNE 180
Query: 617 NDVDICSDFPTQIHLNDDQHSNRQNRCGC 703
+ +I P I + R C C
Sbjct: 181 PEEEIY--LPETIDVASGGRPQRSTGCEC 207
>sp|O24461|RAB7_PRUAR Ras-related protein Rab7
Length = 207
Score = 253 bits (646), Expect = 4e-67
Identities = 126/209 (60%), Positives = 154/209 (73%), Gaps = 3/209 (1%)
Frame = +2
Query: 86 MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 265
MASR GDSGVGKTSLMNQ+VNRKF+NQYKATIGADFLTK+V +DR+ T+Q
Sbjct: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
Query: 266 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 445
IWDTAGQERFQSLGVAFYRGADCCVLVYDV + +F+ L++WR+EFLIQ+ P DPE FPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPF 120
Query: 446 VVIGNKVDLE---SRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQE 616
VV+GNK+D++ SR VS ++A+ WC SKG+IPYFE SAKE NV+ AF +A+ AL E
Sbjct: 121 VVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAKNALNNE 180
Query: 617 NDVDICSDFPTQIHLNDDQHSNRQNRCGC 703
+ +I P I + R + C C
Sbjct: 181 PEEEIY--LPDTIDVAGGGRQQRSSGCEC 207
>sp|P31022|RAB7_PEA Ras-related protein Rab7
Length = 206
Score = 247 bits (630), Expect = 3e-65
Identities = 123/209 (58%), Positives = 152/209 (72%), Gaps = 3/209 (1%)
Frame = +2
Query: 86 MASRXXXXXXXXXXGDSGVGKTSLMNQFVNRKFTNQYKATIGADFLTKDVMVDDRVVTMQ 265
M SR GDSGVGKTSLMNQ+VN+KF+NQYKATIGADFLTK+V +DR+ T+Q
Sbjct: 1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
Query: 266 IWDTAGQERFQSLGVAFYRGADCCVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPF 445
IWDTAGQERFQSLGVAFYRGADCCVLVYDV +F L++WR+EFLIQ+ P DPE FPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSVKSFDNLNNWREEFLIQANPSDPENFPF 120
Query: 446 VVIGNKVDLE---SRAVSIRRAQQWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQE 616
VVIGNK+D++ SR VS ++A+ WC +KG+IPYFE SAKE +NVE+AF +A+ AL
Sbjct: 121 VVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSG 180
Query: 617 NDVDICSDFPTQIHLNDDQHSNRQNRCGC 703
+ ++ P I + + R C C
Sbjct: 181 EEEELY--LPDTIDVGNSSQP-RSTGCEC 206
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,532,517
Number of Sequences: 369166
Number of extensions: 1774305
Number of successful extensions: 5489
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4840
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7859674995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)