Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_G20
(845 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab... 223 4e-58
sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (R... 223 4e-58
sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (... 223 5e-58
sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Ra... 222 9e-58
sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha (... 222 9e-58
sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (... 222 1e-57
sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (... 222 1e-57
sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (... 222 1e-57
sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (R... 221 2e-57
sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (... 221 2e-57
>sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 223 bits (569), Expect = 4e-58
Identities = 103/166 (62%), Positives = 132/166 (79%)
Frame = +2
Query: 2 GEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHD 181
GE+ARCK +ICDP YVKD+V+K+G VIR ICIL+HP+ NTN A S QIIIPQNQVNR D
Sbjct: 272 GEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSD 331
Query: 182 IYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPID 361
IYVC +S+ H+VA+ +IA+V+TTVETK P +E++P L LL IEQ F + SDL+ P D
Sbjct: 332 IYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKD 391
Query: 362 DGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 499
G +S++F+S +YDATTHFETTC D+ D+YKR TGSEFDF +++ K
Sbjct: 392 LGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTGSEFDFEEMKRK 437
>sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 223 bits (569), Expect = 4e-58
Identities = 103/166 (62%), Positives = 132/166 (79%)
Frame = +2
Query: 2 GEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHD 181
GE+ARCK +ICDP YVKD+V+K+G VIR ICIL+HP+ NTN A S QIIIPQNQVNR D
Sbjct: 272 GEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSD 331
Query: 182 IYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPID 361
IYVC +S+ H+VA+ +IA+V+TTVETK P +E++P L LL IEQ F + SDL+ P D
Sbjct: 332 IYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKD 391
Query: 362 DGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 499
G +S++F+S +YDATTHFETTC D+ D+YKR TGSEFDF +++ K
Sbjct: 392 LGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTGSEFDFEEMKRK 437
>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (SMG p25A
GDI)
Length = 447
Score = 223 bits (568), Expect = 5e-58
Identities = 106/166 (63%), Positives = 127/166 (76%)
Frame = +2
Query: 2 GEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHD 181
GEVARCK +ICDP YV D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVNR D
Sbjct: 272 GEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSD 331
Query: 182 IYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPID 361
IYVC +SY H+VA+ +IA+ +TTVET +P +E++P L LL I+Q F SDLYEPID
Sbjct: 332 IYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPID 391
Query: 362 DGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 499
DG ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 392 DGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 222 bits (566), Expect = 9e-58
Identities = 105/166 (63%), Positives = 126/166 (75%)
Frame = +2
Query: 2 GEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHD 181
GEVARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVNR D
Sbjct: 272 GEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSD 331
Query: 182 IYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPID 361
IYVC +SY H+VA+ +IA+ +TTVET P +E++P L LL I+Q F SDLYEPID
Sbjct: 332 IYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPID 391
Query: 362 DGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 499
DG ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 392 DGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 222 bits (566), Expect = 9e-58
Identities = 105/166 (63%), Positives = 126/166 (75%)
Frame = +2
Query: 2 GEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHD 181
GEVARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVNR D
Sbjct: 272 GEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSD 331
Query: 182 IYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPID 361
IYVC +SY H+VA+ +IA+ +TTVET P +E++P L LL I+Q F SDLYEPID
Sbjct: 332 IYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPID 391
Query: 362 DGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 499
DG ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 392 DGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 222 bits (565), Expect = 1e-57
Identities = 105/166 (63%), Positives = 126/166 (75%)
Frame = +2
Query: 2 GEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHD 181
GEVARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVNR D
Sbjct: 272 GEVARCKQLICDPSYIPDRVQKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSD 331
Query: 182 IYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPID 361
IYVC +SY H+VA+ +IA+ +TTVET P +E++P L LL I+Q F SDLYEPID
Sbjct: 332 IYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPID 391
Query: 362 DGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 499
DG ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 392 DGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (XAP-4)
(Oligophrenin-2)
Length = 447
Score = 222 bits (565), Expect = 1e-57
Identities = 104/166 (62%), Positives = 127/166 (76%)
Frame = +2
Query: 2 GEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHD 181
GEVARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVNR D
Sbjct: 272 GEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSD 331
Query: 182 IYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPID 361
IYVC +SY H+VA+ +IA+ +TTVET +P +E++P L LL I+Q F SDLYEPID
Sbjct: 332 IYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPID 391
Query: 362 DGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 499
DG ES+VF S SYDATTHFETTC D+ D+YKR G+ FDF ++ K
Sbjct: 392 DGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRK 437
>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 222 bits (565), Expect = 1e-57
Identities = 104/166 (62%), Positives = 127/166 (76%)
Frame = +2
Query: 2 GEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHD 181
GEVARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVNR D
Sbjct: 272 GEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSD 331
Query: 182 IYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPID 361
IYVC +SY H+VA+ +IA+ +TTVET +P +E++P L LL I+Q F SDLYEPID
Sbjct: 332 IYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPID 391
Query: 362 DGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 499
DG ES+VF S SYDATTHFETTC D+ D+YKR G+ FDF ++ K
Sbjct: 392 DGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRK 437
>sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 221 bits (563), Expect = 2e-57
Identities = 103/166 (62%), Positives = 131/166 (78%)
Frame = +2
Query: 2 GEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHD 181
GE+ARCK +ICDP YVKD+V+K+G VIR ICIL+HP+ NTN A S QIIIPQNQVNR D
Sbjct: 272 GEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSD 331
Query: 182 IYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPID 361
IYVC +S+ H+VA+ +IA+V+TTVETK P +E++P L LL IEQ F + SDL P D
Sbjct: 332 IYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKD 391
Query: 362 DGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 499
G ES++F+S +YDATTHFETTC D+ ++YKR TGSEFDF +++ K
Sbjct: 392 LGTESQIFISRTYDATTHFETTCDDIKNIYKRMTGSEFDFEEMKRK 437
>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 221 bits (563), Expect = 2e-57
Identities = 104/166 (62%), Positives = 126/166 (75%)
Frame = +2
Query: 2 GEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVNRNHD 181
GEVARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVNR D
Sbjct: 272 GEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSD 331
Query: 182 IYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLYEPID 361
IYVC +SY H+VA+ +IA+ +TTVET +P +E++P L LL I+Q F SDLYEPID
Sbjct: 332 IYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPID 391
Query: 362 DGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 499
DG ES+VF S SYDATTHFETTC D+ D+YKR G FDF ++ K
Sbjct: 392 DGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGMAFDFENMKRK 437
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,090,376
Number of Sequences: 369166
Number of extensions: 1947088
Number of successful extensions: 5715
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5712
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)