Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_G13
(814 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q94516|AT5F1_DROME ATP synthase B chain, mitochondrial p... 147 4e-35
sp|P24539|AT5F1_HUMAN ATP synthase B chain, mitochondrial p... 131 3e-30
sp|Q5RFH9|AT5F1_PONPY ATP synthase B chain, mitochondrial p... 128 2e-29
sp|Q9CQQ7|AT5F1_MOUSE ATP synthase B chain, mitochondrial p... 123 5e-28
sp|P13619|AT5F1_BOVIN ATP synthase B chain, mitochondrial 119 1e-26
sp|P19511|AT5F1_RAT ATP synthase B chain, mitochondrial pre... 118 2e-26
sp|Q7SE71|ATPF_NEUCR ATP synthase subunit 4, mitochondrial ... 44 4e-04
sp|Q6F0X5|SYL_MESFL Leucyl-tRNA synthetase (Leucine--tRNA l... 34 0.54
sp|Q00623|APOA1_MOUSE Apolipoprotein A-I precursor (Apo-AI)... 32 1.6
sp|Q9Z7F1|Y755_CHLPN Hypothetical UPF0242 protein CPn0755/C... 32 1.6
>sp|Q94516|AT5F1_DROME ATP synthase B chain, mitochondrial precursor (FO-ATP synthase
subunit B)
Length = 243
Score = 147 bits (370), Expect = 4e-35
Identities = 80/206 (38%), Positives = 122/206 (59%), Gaps = 2/206 (0%)
Frame = +3
Query: 132 HP-KVRLGFIPHAWFEAMYNKTGVTGPYVLLFSSLAFALQKEYLICDPEFAKGPAMFFVC 308
HP KVRLGF+P WF+ YNKTGVTGPY + + KE + + E+ G ++ +
Sbjct: 40 HPGKVRLGFLPEEWFQFFYNKTGVTGPYTFGVGLITYLCSKEIYVMEHEYYSGLSLGIMA 99
Query: 309 VFLVKLLGPIFRPFSH-RIKKKTSWFFDIRPRDIIEKLGTKSLEVAKMEKASADVNIDLF 485
+ VK LGP+ ++ I K S + + R ++ K+ + ++E K E+ AD + L
Sbjct: 100 IIAVKKLGPVIAKWADGEIDKIESEWKEGREAEL--KVLSDAIEAEKKEQWRADGALLLM 157
Query: 486 QAAKENVGLQLESVYRKRNLELYRAVKSRLDYFKDKELVKQRFQRSYMINWIVDSVVKDF 665
+A KEN+ LQLE+ +R+R + +Y VK RLDY + V++R + +M+NWI +V+
Sbjct: 158 EAKKENIALQLEAAFRERAMNVYSEVKRRLDYQVECRHVERRLSQKHMVNWITTNVLASI 217
Query: 666 TPEQEKATLNQCITDLKILAKNQSSA 743
+P+QEK TLN+CI DL LA SA
Sbjct: 218 SPQQEKETLNKCIADLSALALRVKSA 243
>sp|P24539|AT5F1_HUMAN ATP synthase B chain, mitochondrial precursor
Length = 256
Score = 131 bits (329), Expect = 3e-30
Identities = 74/223 (33%), Positives = 123/223 (55%)
Frame = +3
Query: 60 QAHETYYGKQRDMVNYPPAAIVDYHPKVRLGFIPHAWFEAMYNKTGVTGPYVLLFSSLAF 239
QA T++ Q +V PP + +Y KVR G IP +F+ +Y KTGVTGPYVL + +
Sbjct: 29 QATRTFHTGQPHLVPVPP--LPEYGGKVRYGLIPEEFFQFLYPKTGVTGPYVLGTGLILY 86
Query: 240 ALQKEYLICDPEFAKGPAMFFVCVFLVKLLGPIFRPFSHRIKKKTSWFFDIRPRDIIEKL 419
AL KE + E ++ V V+ +K GP F+ ++ ++ + + I+ +
Sbjct: 87 ALSKEIYVISAETFTALSVLGVMVYGIKKYGPFVADFADKLNEQKLAQLEEAKQASIQHI 146
Query: 420 GTKSLEVAKMEKASADVNIDLFQAAKENVGLQLESVYRKRNLELYRAVKSRLDYFKDKEL 599
+++ K ++A LF + N+ + LE YR+R +Y+ VK+RLDY +
Sbjct: 147 -QNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLYRVYKEVKNRLDYHISVQN 205
Query: 600 VKQRFQRSYMINWIVDSVVKDFTPEQEKATLNQCITDLKILAK 728
+ +R ++ +MINW+ VV+ + +QEK T+ +CI DLK+LAK
Sbjct: 206 MMRRKEQEHMINWVEKHVVQSISTQQEKETIAKCIADLKLLAK 248
>sp|Q5RFH9|AT5F1_PONPY ATP synthase B chain, mitochondrial precursor
Length = 256
Score = 128 bits (321), Expect = 2e-29
Identities = 71/223 (31%), Positives = 124/223 (55%)
Frame = +3
Query: 60 QAHETYYGKQRDMVNYPPAAIVDYHPKVRLGFIPHAWFEAMYNKTGVTGPYVLLFSSLAF 239
QA T++ Q + PP + +Y KVR G IP +F+ +Y KTGVTGPYVL + +
Sbjct: 29 QATRTFHTGQPHLAPVPP--LPEYGGKVRYGLIPEEFFQFLYPKTGVTGPYVLGTGLILY 86
Query: 240 ALQKEYLICDPEFAKGPAMFFVCVFLVKLLGPIFRPFSHRIKKKTSWFFDIRPRDIIEKL 419
AL KE + E ++ V V+ +K GP F+ ++ ++ + + I+++
Sbjct: 87 ALSKEIYVISAETFTALSLIGVMVYGIKKYGPAVADFADKLNEQKLAQLEEAKQTSIQQI 146
Query: 420 GTKSLEVAKMEKASADVNIDLFQAAKENVGLQLESVYRKRNLELYRAVKSRLDYFKDKEL 599
++++ K ++A LF + N+ + LE YR+R +Y+ VK+RLDY +
Sbjct: 147 -QNAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLYRVYKEVKNRLDYHIYVQN 205
Query: 600 VKQRFQRSYMINWIVDSVVKDFTPEQEKATLNQCITDLKILAK 728
+ ++ ++ +M+NW+ VV+ + +QEK T+ +CI DLK+LAK
Sbjct: 206 MMRQKEQEHMVNWVEKHVVQSISTQQEKETIAKCIADLKLLAK 248
>sp|Q9CQQ7|AT5F1_MOUSE ATP synthase B chain, mitochondrial precursor
Length = 256
Score = 123 bits (309), Expect = 5e-28
Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 1/224 (0%)
Frame = +3
Query: 60 QAHETYYGKQRDMVNYPPAAIVDYHPKVRLGFIPHAWFEAMYNKTGVTGPYVLLFSSLAF 239
QA ++ Q + PP + +Y KVRLG IP +F+ +Y KTGVTGPYVL +
Sbjct: 29 QATRAFHTGQPRLAPLPP--LPEYGGKVRLGLIPEEFFQFLYPKTGVTGPYVLGTGLSLY 86
Query: 240 ALQKEYLICDPEFAKGPAMFFVCVFLVKLLGPIFRPFSHRI-KKKTSWFFDIRPRDIIEK 416
L KE + PE ++ + V+++K G F F ++ ++K + +++ + K
Sbjct: 87 FLSKEIYVITPETFSTISVVGLIVYVIKKYGASFGEFIDKLNEEKIAQLEEVKQSSM--K 144
Query: 417 LGTKSLEVAKMEKASADVNIDLFQAAKENVGLQLESVYRKRNLELYRAVKSRLDYFKDKE 596
++++ K ++A LF + N+ L LE YR+R + Y+ VK+RLDY +
Sbjct: 145 QIQDAIDMEKAQQALVQKRHYLFDVQRNNIALALEVTYRERLHKAYKEVKNRLDYHISVQ 204
Query: 597 LVKQRFQRSYMINWIVDSVVKDFTPEQEKATLNQCITDLKILAK 728
+ +R + +MI+W+ VVK + +QEK T+ +CI DLK+LAK
Sbjct: 205 NMMRRKEEEHMIDWVEKHVVKSISVQQEKETIAKCIEDLKLLAK 248
>sp|P13619|AT5F1_BOVIN ATP synthase B chain, mitochondrial
Length = 214
Score = 119 bits (298), Expect = 1e-26
Identities = 67/208 (32%), Positives = 115/208 (55%), Gaps = 1/208 (0%)
Frame = +3
Query: 108 PPAAIVDYHPKVRLGFIPHAWFEAMYNKTGVTGPYVLLFSSLAFALQKEYLICDPEFAKG 287
P + ++ KVR G IP +F+ +Y KTGVTGPYVL + + L KE + PE
Sbjct: 1 PVPPLPEHGGKVRFGLIPEEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITPETFSA 60
Query: 288 PAMFFVCVFLVKLLGPIFRPFSHRI-KKKTSWFFDIRPRDIIEKLGTKSLEVAKMEKASA 464
+ V++VK G F+ ++ ++K + +++ I K ++++ K ++A
Sbjct: 61 ISTIGFLVYIVKKYGASVGEFADKLNEQKIAQLEEVKQASI--KQIQDAIDMEKSQQALV 118
Query: 465 DVNIDLFQAAKENVGLQLESVYRKRNLELYRAVKSRLDYFKDKELVKQRFQRSYMINWIV 644
LF + N+ + LE YR+R +YR VK+RLDY + + ++ ++ +MINW+
Sbjct: 119 QKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINWVE 178
Query: 645 DSVVKDFTPEQEKATLNQCITDLKILAK 728
VV+ + +QEK T+ +CI DLK+L+K
Sbjct: 179 KRVVQSISAQQEKETIAKCIADLKLLSK 206
>sp|P19511|AT5F1_RAT ATP synthase B chain, mitochondrial precursor
Length = 256
Score = 118 bits (296), Expect = 2e-26
Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 4/227 (1%)
Frame = +3
Query: 60 QAHETYYGKQRDMVNYPPAAIVDYHPKVRLGFIPHAWFEAMYNKTGVTGPYVLLFSSLAF 239
QA ++ Q + PP + +Y KVRLG IP +F+ +Y KTGVTGPYVL +
Sbjct: 29 QATRVFHTGQPRLAPLPP--LPEYGGKVRLGLIPEEFFQFLYPKTGVTGPYVLGTGLSLY 86
Query: 240 ALQKEYLICDPEFAKGPAMFFVCVFLVKLLGPIFRPFSHRIKKKTSWFFDIRPRDIIEKL 419
L KE + PE ++ + V+++K G F ++ ++ I + I++
Sbjct: 87 FLSKEIYVITPETFSTISVVGLIVYVIKKYGASIGEFIDKLNEEK-----IAQLEEIKQS 141
Query: 420 GTKSLEVA----KMEKASADVNIDLFQAAKENVGLQLESVYRKRNLELYRAVKSRLDYFK 587
K ++ A K ++A LF + N+ L LE YR+R + Y+ VK+RLDY
Sbjct: 142 SMKQIQDAINREKAQQALVQKRHYLFDVQRNNIALALEVTYRERLHKAYKEVKNRLDYHI 201
Query: 588 DKELVKQRFQRSYMINWIVDSVVKDFTPEQEKATLNQCITDLKILAK 728
+ + +R + +MINW+ V++ + +QEK T+ +CI DLK+LAK
Sbjct: 202 SVQDMMRRKEGEHMINWVEKHVIQSISAQQEKETIAKCIGDLKMLAK 248
>sp|Q7SE71|ATPF_NEUCR ATP synthase subunit 4, mitochondrial precursor
Length = 241
Score = 44.3 bits (103), Expect = 4e-04
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 3/167 (1%)
Frame = +3
Query: 237 FALQKEYLICDPEFAKGPAMFFVCVFLVKLLGPIFRPFSHRIKKKTSWFFDIRPRDIIEK 416
+AL EY + + E + V L+K GP+++ ++ K + D +
Sbjct: 76 YALSNEYYVVNEETVVAFCLLSVWGGLIKFGGPLYKKWADEQSDKIKNILNSARADHTQA 135
Query: 417 LGTKSLEVAKMEKASADVNIDLFQAAKENVGLQLESVYRKRNLELYRAVKSRLD-YFKDK 593
+ T+ +V +M D+ LF +KE L+ E+ ++ L K+ LD + + +
Sbjct: 136 VKTRIGDVKQM-SGVIDITKTLFAVSKETAKLEAEAYELEQRTALAAEAKTVLDSWVRYE 194
Query: 594 ELVKQRFQRSYMINWIVDSVVKDF-TPEQEKATLNQCITDL-KILAK 728
VKQR Q+ + ++ V K+ P+ K L Q + D+ KI++K
Sbjct: 195 SQVKQR-QQKELAQTVIAKVQKELENPKVLKQILEQSVADVEKIVSK 240
>sp|Q6F0X5|SYL_MESFL Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
Length = 801
Score = 33.9 bits (76), Expect = 0.54
Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Frame = +3
Query: 330 GPIFRPFSHRIKKKTSWFFDIRPRDIIEKLG-----TKS----LEVAKMEKASADVNIDL 482
GP++RP+ K S + ++ EKLG TK + +K+ + + + +
Sbjct: 688 GPVYRPYIEGFVKMLSIYAPFIGEELWEKLGHAPSITKQAWPVFDPSKLVSNTVVIALQI 747
Query: 483 FQAAKENVGLQLESVYRKRNLELYRAVKSRLDYFKDKELVKQRFQRSYMINWIVDSVVK 659
+ + ++ ++ + + LEL + +S + Y KDKE++K+ +++ IV+ V+K
Sbjct: 748 NGKLRATIEVEKGTI-KDKLLELAKKQESIISYIKDKEIIKE----IAVVDRIVNIVIK 801
>sp|Q00623|APOA1_MOUSE Apolipoprotein A-I precursor (Apo-AI) (ApoA-I)
Length = 264
Score = 32.3 bits (72), Expect = 1.6
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Frame = +3
Query: 315 LVKLLGPIFRPFSHRIKKKTSWFFDIRPRDIIEKLGTKSLEVAKMEKASADVNIDLFQAA 494
L + LGP+ R F ++K+T W +D+ E + + +K + +++L++
Sbjct: 83 LQERLGPLTRDFWDNLEKETDWVRQEMNKDLEEVKQKVQPYLDEFQKKWKE-DVELYRQK 141
Query: 495 KENVGLQLESVYRKRNLELYRAVKSRLDYFKDKELVKQRFQRSYMINWIVDSVVKDFTP- 671
+G +L+ R++ EL + + F+D+ R++ VDS+ P
Sbjct: 142 VAPLGAELQESARQKLQELQGRLSPVAEEFRDR-------MRTH-----VDSLRTQLAPH 189
Query: 672 -EQEKATLNQCITDLK 716
EQ + +L Q + +LK
Sbjct: 190 SEQMRESLAQRLAELK 205
>sp|Q9Z7F1|Y755_CHLPN Hypothetical UPF0242 protein CPn0755/CP1117/CPj0755/CpB0783
Length = 401
Score = 32.3 bits (72), Expect = 1.6
Identities = 31/141 (21%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Frame = +3
Query: 303 VCVFLVKLLGPIFRPFSHRIKKKTSWFFDIRPRD------IIEKLGTKSLEVAKMEKASA 464
VC + + I+ F WFF +R R+ ++ L TK ++ + +
Sbjct: 29 VCYPFLSISQKIYGYFVFTTISSLGWFFALRRRENQLKTAAVQLLQTKIRKLTENNEGLR 88
Query: 465 DVNIDLFQAAKENVGLQLESVYRKRNLELYRA--VKSRLDYFKDKELVKQRFQRSYMINW 638
+ L + +E+ LQ++S K +L + VK++ + K + L+ R + + +
Sbjct: 89 QIRESLKEHQQESAQLQIQSQKLKNSLFHLQGLLVKTKGEGQKLETLLLHRTEENRCLKM 148
Query: 639 IVDSVVKDFTPEQEKA-TLNQ 698
VDS++++ + E+ TLN+
Sbjct: 149 QVDSLIQECGEKTEEVQTLNR 169
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,067,460
Number of Sequences: 369166
Number of extensions: 1935236
Number of successful extensions: 6259
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6251
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7763237265
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)