Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_F21-2
(435 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8K9N7|Y286_BUCAP Hypothetical protein BUsg286 28 6.5
sp|Q04664|CPSE_STRA3 Galactosyl transferase cpsE 28 6.5
sp|Q9AFI0|CPSE_STRA5 Galactosyl transferase cpsE 28 6.5
sp|P24877|NU2M_ASCSU NADH-ubiquinone oxidoreductase chain 2... 28 8.4
>sp|Q8K9N7|Y286_BUCAP Hypothetical protein BUsg286
Length = 413
Score = 28.5 bits (62), Expect = 6.5
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -1
Query: 165 KKIYSFTYIVKTRKINKNEVQ*KSNIYYIIKLKRS*FINILMLEK 31
KK+Y+F+ K +KI NE+ S++ LK IN+++L K
Sbjct: 131 KKLYNFS---KLKKIYNNEIIISSDLAKYFSLKEGDCINLIILNK 172
>sp|Q04664|CPSE_STRA3 Galactosyl transferase cpsE
Length = 449
Score = 28.5 bits (62), Expect = 6.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 90 YLIFIVLHFY*FFWF*QYM*NCKFFLEFIMIYFVLSEIITFI 215
Y++F + FY FW Y+ K L++ Y +S + FI
Sbjct: 36 YIVFYLSDFYRDFWSRGYLEEFKMVLKYSFYYIFISSSLFFI 77
>sp|Q9AFI0|CPSE_STRA5 Galactosyl transferase cpsE
Length = 449
Score = 28.5 bits (62), Expect = 6.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 90 YLIFIVLHFY*FFWF*QYM*NCKFFLEFIMIYFVLSEIITFI 215
Y++F + FY FW Y+ K L++ Y +S + FI
Sbjct: 36 YIVFYLSDFYRDFWSRGYLEEFKMVLKYSFYYIFISSSLFFI 77
>sp|P24877|NU2M_ASCSU NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 300
Score = 28.1 bits (61), Expect = 8.4
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 150 NCKFFLEFIMIYFVLSEIITFIGLYFLI*DLMIF*G*LDISVYI 281
N F + F + FVLSE+ GL+ L LM+F L S+++
Sbjct: 207 NVPFSVSFFIKIFVLSEVFKLDGLFLLFLLLMMFLSMLCFSLWL 250
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,328,467
Number of Sequences: 369166
Number of extensions: 629323
Number of successful extensions: 1000
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)