Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_F21-1
(302 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35317|AT1A_HYDAT Sodium/potassium-transporting ATPase a... 56 3e-08
sp|P13607|ATNA_DROME Sodium/potassium-transporting ATPase a... 55 5e-08
sp|P28774|AT1B_ARTSF Sodium/potassium-transporting ATPase a... 55 7e-08
sp|Q64541|AT1A4_RAT Sodium/potassium-transporting ATPase al... 51 7e-07
sp|Q13733|AT1A4_HUMAN Sodium/potassium-transporting ATPase ... 51 1e-06
sp|Q9WV27|AT1A4_MOUSE Sodium/potassium-transporting ATPase ... 50 1e-06
sp|P50993|AT1A2_HUMAN Sodium/potassium-transporting ATPase ... 50 2e-06
sp|P06686|AT1A2_RAT Sodium/potassium-transporting ATPase al... 50 2e-06
sp|P30714|AT1A1_BUFMA Sodium/potassium-transporting ATPase ... 49 4e-06
sp|P25489|AT1A1_CATCO Sodium/potassium-transporting ATPase ... 49 4e-06
>sp|P35317|AT1A_HYDAT Sodium/potassium-transporting ATPase alpha chain (Sodium pump)
(Na+/K+ ATPase)
Length = 1031
Score = 55.8 bits (133), Expect = 3e-08
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +2
Query: 2 WLPAIPFSASIFIYDEVRKFLLRKWKNGSWLENETYY 112
WLP +PFS IF+YDE+R++LLRK G W+E ETYY
Sbjct: 996 WLPGLPFSLLIFVYDEIRRYLLRK-NPGGWVEKETYY 1031
>sp|P13607|ATNA_DROME Sodium/potassium-transporting ATPase alpha chain (Sodium pump)
(Na+/K+ ATPase)
Length = 1041
Score = 55.1 bits (131), Expect = 5e-08
Identities = 24/37 (64%), Positives = 28/37 (75%)
Frame = +2
Query: 2 WLPAIPFSASIFIYDEVRKFLLRKWKNGSWLENETYY 112
W PAIPF+ +IFIYDE R+F LR+ G WLE ETYY
Sbjct: 1006 WFPAIPFALAIFIYDETRRFYLRR-NPGGWLEQETYY 1041
>sp|P28774|AT1B_ARTSF Sodium/potassium-transporting ATPase alpha chain (Sodium pump)
(Na+/K+ ATPase)
Length = 1004
Score = 54.7 bits (130), Expect = 7e-08
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = +2
Query: 2 WLPAIPFSASIFIYDEVRKFLLRKWKNGSWLENETYY 112
W PA+PFS IF+YDE RKF+LR+ G W+E ETYY
Sbjct: 969 WFPALPFSFLIFVYDEARKFILRR-NPGGWVEQETYY 1004
>sp|Q64541|AT1A4_RAT Sodium/potassium-transporting ATPase alpha-4 chain (Sodium pump 4)
(Na+/K+ ATPase 4)
Length = 1028
Score = 51.2 bits (121), Expect = 7e-07
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = +2
Query: 2 WLPAIPFSASIFIYDEVRKFLLRKWKNGSWLENETYY 112
W A+P+S IFIYDEVRK ++R+ + G WLE ETYY
Sbjct: 993 WFCALPYSVLIFIYDEVRKLIIRR-RPGGWLEKETYY 1028
>sp|Q13733|AT1A4_HUMAN Sodium/potassium-transporting ATPase alpha-4 chain (Sodium pump 4)
(Na+/K+ ATPase 4)
Length = 1029
Score = 50.8 bits (120), Expect = 1e-06
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +2
Query: 2 WLPAIPFSASIFIYDEVRKFLLRKWKNGSWLENETYY 112
WL AIP+S IF+YDE+RK L+R+ +G W+E ETYY
Sbjct: 994 WLCAIPYSILIFVYDEIRKLLIRQHPDG-WVERETYY 1029
>sp|Q9WV27|AT1A4_MOUSE Sodium/potassium-transporting ATPase alpha-4 chain (Sodium pump 4)
(Na+/K+ ATPase 4)
Length = 1032
Score = 50.4 bits (119), Expect = 1e-06
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +2
Query: 2 WLPAIPFSASIFIYDEVRKFLLRKWKNGSWLENETYY 112
W A+P+S IF+YDE+RK ++R+ + G WLE ETYY
Sbjct: 997 WFCALPYSVLIFVYDEIRKLIIRR-RPGGWLEKETYY 1032
>sp|P50993|AT1A2_HUMAN Sodium/potassium-transporting ATPase alpha-2 chain precursor (Sodium
pump 2) (Na+/K+ ATPase 2)
Length = 1020
Score = 50.1 bits (118), Expect = 2e-06
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +2
Query: 2 WLPAIPFSASIFIYDEVRKFLLRKWKNGSWLENETYY 112
W A P+S IFIYDEVRK +LR++ G W+E ETYY
Sbjct: 985 WFCAFPYSLLIFIYDEVRKLILRRYP-GGWVEKETYY 1020
>sp|P06686|AT1A2_RAT Sodium/potassium-transporting ATPase alpha-2 chain precursor (Sodium
pump 2) (Na+/K+ ATPase 2) (Alpha(+))
sp|Q6PIE5|AT1A2_MOUSE Sodium/potassium-transporting ATPase alpha-2 chain precursor (Sodium
pump 2) (Na+/K+ ATPase 2) (Alpha(+))
Length = 1020
Score = 50.1 bits (118), Expect = 2e-06
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = +2
Query: 2 WLPAIPFSASIFIYDEVRKFLLRKWKNGSWLENETYY 112
W A P+S IFIYDEVRK +LR++ G W+E ETYY
Sbjct: 985 WFCAFPYSLLIFIYDEVRKLILRRYP-GGWVEKETYY 1020
>sp|P30714|AT1A1_BUFMA Sodium/potassium-transporting ATPase alpha-1 chain precursor (Sodium
pump 1) (Na+/K+ ATPase 1)
Length = 1023
Score = 48.9 bits (115), Expect = 4e-06
Identities = 22/37 (59%), Positives = 26/37 (70%)
Frame = +2
Query: 2 WLPAIPFSASIFIYDEVRKFLLRKWKNGSWLENETYY 112
W A P+S IFIYDEVRK +LR+ G W+E ETYY
Sbjct: 988 WFCAFPYSLLIFIYDEVRKLILRR-SPGGWVEKETYY 1023
>sp|P25489|AT1A1_CATCO Sodium/potassium-transporting ATPase alpha-1 chain precursor (Sodium
pump 1) (Na+/K+ ATPase 1)
Length = 1027
Score = 48.9 bits (115), Expect = 4e-06
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +2
Query: 2 WLPAIPFSASIFIYDEVRKFLLRKWKNGSWLENETYY 112
W A P+S IFIYDE+RK +LR+ G W+E ETYY
Sbjct: 992 WFCAFPYSLLIFIYDEIRKLILRR-NPGGWMERETYY 1027
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,684,359
Number of Sequences: 369166
Number of extensions: 496084
Number of successful extensions: 1002
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)