Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_F20
(281 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91828|AR11_XENLA Apoptosis regulator R11 (XR11) 40 0.002
sp|Q07816|BCLX_CHICK Apoptosis regulator Bcl-X (Bcl-2-like ... 38 0.006
sp|Q00709|BCL2_CHICK Apoptosis regulator Bcl-2 33 0.16
sp|Q07817|BCLX_HUMAN Apoptosis regulator Bcl-X (Bcl-2-like ... 33 0.16
sp|P53563|BCLX_RAT Apoptosis regulator Bcl-X (Bcl-2-like 1 ... 33 0.20
sp|Q64373|BCLX_MOUSE Apoptosis regulator Bcl-X (Bcl-2-like ... 33 0.20
sp|O77737|BCLX_PIG Apoptosis regulator Bcl-X (Bcl-2-like 1 ... 33 0.20
sp|P10415|BCL2_HUMAN Apoptosis regulator Bcl-2 33 0.27
sp|Q9JJV8|BCL2_CRIGR Apoptosis regulator Bcl-2 33 0.27
sp|P10417|BCL2_MOUSE Apoptosis regulator Bcl-2 33 0.27
>sp|Q91828|AR11_XENLA Apoptosis regulator R11 (XR11)
Length = 204
Score = 40.0 bits (92), Expect = 0.002
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 43 WSIELVLTKIHPWVRENGGWEHIIQL--SNSRNHLDEVTDLFKKLGTVALGITGLFAL 210
W + + + PW++ENGGWE + L N+ E + F +L T+ + +TG+FAL
Sbjct: 141 WMVNYLEHTLQPWMQENGGWEAFVGLYGKNAAAQSRESQERFGRLLTIVM-LTGVFAL 197
>sp|Q07816|BCLX_CHICK Apoptosis regulator Bcl-X (Bcl-2-like 1 protein)
Length = 229
Score = 38.1 bits (87), Expect = 0.006
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 40 NWSIELVLTKIHPWVRENGGWEHIIQL--SNSRNHLDEVTDLFKKLGTVALGITGLFALG 213
+W + + PW++ENGGWE + L +N+ L + + F K + G+ LG
Sbjct: 164 SWMTTYLTDHLDPWIQENGGWERFVDLYGNNAAAELRKGQETFNKWLLTGATVAGVLLLG 223
>sp|Q00709|BCL2_CHICK Apoptosis regulator Bcl-2
Length = 233
Score = 33.5 bits (75), Expect = 0.16
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 28 DKYYNWSIELVLTKIHPWVRENGGWEHIIQL 120
D W E + +H W+++NGGW+ ++L
Sbjct: 165 DNIATWMTEYLNRHLHNWIQDNGGWDAFVEL 195
>sp|Q07817|BCLX_HUMAN Apoptosis regulator Bcl-X (Bcl-2-like 1 protein)
Length = 233
Score = 33.5 bits (75), Expect = 0.16
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 43 WSIELVLTKIHPWVRENGGWEHIIQL--SNSRNHLDEVTDLFKKLGTVALGITGLFALG 213
W + + PW++ENGGW+ ++L +N+ + + F + + + G+ LG
Sbjct: 169 WMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLG 227
>sp|P53563|BCLX_RAT Apoptosis regulator Bcl-X (Bcl-2-like 1 protein)
Length = 233
Score = 33.1 bits (74), Expect = 0.20
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 40 NWSIELVLTKIHPWVRENGGWEHIIQL--SNSRNHLDEVTDLFKKLGTVALGITGLFALG 213
+W + + PW++ENGGW+ + L +N+ + + F + + + G+ LG
Sbjct: 168 SWMATYLNDHLEPWIQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLG 227
>sp|Q64373|BCLX_MOUSE Apoptosis regulator Bcl-X (Bcl-2-like 1 protein)
Length = 233
Score = 33.1 bits (74), Expect = 0.20
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 40 NWSIELVLTKIHPWVRENGGWEHIIQL--SNSRNHLDEVTDLFKKLGTVALGITGLFALG 213
+W + + PW++ENGGW+ + L +N+ + + F + + + G+ LG
Sbjct: 168 SWMATYLNDHLEPWIQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLG 227
>sp|O77737|BCLX_PIG Apoptosis regulator Bcl-X (Bcl-2-like 1 protein)
Length = 233
Score = 33.1 bits (74), Expect = 0.20
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 43 WSIELVLTKIHPWVRENGGWEHIIQL--SNSRNHLDEVTDLFKKLGTVALGITGLFALG 213
W + + PW++ENGGW+ ++L +N+ + + F + + + G+ LG
Sbjct: 169 WMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTLAGVVLLG 227
>sp|P10415|BCL2_HUMAN Apoptosis regulator Bcl-2
Length = 239
Score = 32.7 bits (73), Expect = 0.27
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 43 WSIELVLTKIHPWVRENGGWEHIIQL 120
W E + +H W+++NGGW+ ++L
Sbjct: 176 WMTEYLNRHLHTWIQDNGGWDAFVEL 201
>sp|Q9JJV8|BCL2_CRIGR Apoptosis regulator Bcl-2
Length = 236
Score = 32.7 bits (73), Expect = 0.27
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 43 WSIELVLTKIHPWVRENGGWEHIIQL 120
W E + +H W+++NGGW+ ++L
Sbjct: 173 WMTEYLNRHLHTWIQDNGGWDAFVEL 198
>sp|P10417|BCL2_MOUSE Apoptosis regulator Bcl-2
Length = 236
Score = 32.7 bits (73), Expect = 0.27
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 43 WSIELVLTKIHPWVRENGGWEHIIQL 120
W E + +H W+++NGGW+ ++L
Sbjct: 173 WMTEYLNRHLHTWIQDNGGWDAFVEL 198
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,585,565
Number of Sequences: 369166
Number of extensions: 795440
Number of successful extensions: 2159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2158
length of database: 68,354,980
effective HSP length: 63
effective length of database: 56,716,675
effective search space used: 1701500250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)