Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_F18
(460 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid... 159 4e-39
sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolip... 158 5e-39
sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolip... 157 1e-38
sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolip... 157 1e-38
sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolip... 157 1e-38
sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolip... 156 2e-38
sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolip... 155 4e-38
sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolip... 154 7e-38
sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolip... 151 8e-37
sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolip... 147 1e-35
>sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P63082|VATL_MOUSE Vacuolar ATP synthase 16 kDa proteolipid subunit (PL16)
Length = 155
Score = 159 bits (401), Expect = 4e-39
Identities = 89/121 (73%), Positives = 94/121 (77%)
Frame = +3
Query: 3 AKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIGTNYTMEKSLRHXX 182
AKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA + T+ +S
Sbjct: 35 AKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSLTDGITLYRSFLQLG 94
Query: 183 XXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILST 362
IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILST
Sbjct: 95 AGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILST 154
Query: 363 K 365
K
Sbjct: 155 K 155
>sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolipid subunit (15 kDa
mediatophore protein)
Length = 154
Score = 158 bits (400), Expect = 5e-39
Identities = 89/121 (73%), Positives = 95/121 (78%)
Frame = +3
Query: 3 AKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIGTNYTMEKSLRHXX 182
AKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA + + ++ KS
Sbjct: 34 AKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSLTEDISLFKSFLQLG 93
Query: 183 XXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILST 362
IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILST
Sbjct: 94 AGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILST 153
Query: 363 K 365
K
Sbjct: 154 K 154
>sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 157 bits (397), Expect = 1e-38
Identities = 88/121 (72%), Positives = 94/121 (77%)
Frame = +3
Query: 3 AKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIGTNYTMEKSLRHXX 182
AKSGTGIA+M+VMRPE IMKSIIPVVMAGIIAIYGLVVAVLIA + + ++ KS
Sbjct: 35 AKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDDISLYKSFLQLG 94
Query: 183 XXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILST 362
IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILST
Sbjct: 95 AGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILST 154
Query: 363 K 365
K
Sbjct: 155 K 155
>sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 157 bits (397), Expect = 1e-38
Identities = 87/121 (71%), Positives = 94/121 (77%)
Frame = +3
Query: 3 AKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIGTNYTMEKSLRHXX 182
AKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYGLVVAVLIA + ++ +S
Sbjct: 35 AKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDGISLYRSFLQLG 94
Query: 183 XXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILST 362
IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILST
Sbjct: 95 AGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILST 154
Query: 363 K 365
K
Sbjct: 155 K 155
>sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 157 bits (397), Expect = 1e-38
Identities = 87/121 (71%), Positives = 94/121 (77%)
Frame = +3
Query: 3 AKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIGTNYTMEKSLRHXX 182
AKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYGLVVAVLIA + ++ +S
Sbjct: 35 AKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDGISLYRSFLQLG 94
Query: 183 XXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILST 362
IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILST
Sbjct: 95 AGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILST 154
Query: 363 K 365
K
Sbjct: 155 K 155
>sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 156 bits (395), Expect = 2e-38
Identities = 89/124 (71%), Positives = 94/124 (75%), Gaps = 3/124 (2%)
Frame = +3
Query: 3 AKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI---GTNYTMEKSLR 173
AKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA + NYT+ K
Sbjct: 32 AKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDAPSNNYTLYKGFI 91
Query: 174 HXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALI 353
H IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+
Sbjct: 92 HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIY 151
Query: 354 LSTK 365
L TK
Sbjct: 152 LYTK 155
>sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 155 bits (392), Expect = 4e-38
Identities = 88/124 (70%), Positives = 95/124 (76%), Gaps = 3/124 (2%)
Frame = +3
Query: 3 AKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIGT---NYTMEKSLR 173
AKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA + + NYT+ +
Sbjct: 32 AKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDSPSNNYTLYRGFI 91
Query: 174 HXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALI 353
H IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+
Sbjct: 92 HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIY 151
Query: 354 LSTK 365
L TK
Sbjct: 152 LYTK 155
>sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolipid subunit (V-ATPase
C-subunit)
Length = 157
Score = 154 bits (390), Expect = 7e-38
Identities = 88/123 (71%), Positives = 94/123 (76%), Gaps = 2/123 (1%)
Frame = +3
Query: 3 AKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIGT--NYTMEKSLRH 176
AKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA + T Y++ K H
Sbjct: 35 AKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDTPTKYSLYKGFIH 94
Query: 177 XXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALIL 356
IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+ L
Sbjct: 95 LGAGLAVGISGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 154
Query: 357 STK 365
TK
Sbjct: 155 YTK 157
>sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolipid subunit (Ductin) (VHA16K)
Length = 159
Score = 151 bits (381), Expect = 8e-37
Identities = 86/123 (69%), Positives = 94/123 (76%), Gaps = 2/123 (1%)
Frame = +3
Query: 3 AKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQIG--TNYTMEKSLRH 176
AKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA + + Y++ + H
Sbjct: 37 AKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALEEPSKYSLYRGFIH 96
Query: 177 XXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALIL 356
IGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+ L
Sbjct: 97 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 156
Query: 357 STK 365
TK
Sbjct: 157 YTK 159
>sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 159
Score = 147 bits (371), Expect = 1e-35
Identities = 83/123 (67%), Positives = 92/123 (74%), Gaps = 2/123 (1%)
Frame = +3
Query: 3 AKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAQQI--GTNYTMEKSLRH 176
AKSG GI++M+VMRPELIMK IIPVVMAGIIAIYGLVVAVLIA ++ YT+ + H
Sbjct: 34 AKSGVGISAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIAGKLDEAPTYTLYQGFVH 93
Query: 177 XXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALIL 356
IGIVGDAGVRGTAQQPRL+VGMILILIFAEVLGLYGLIVA+ L
Sbjct: 94 MGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIVAIFL 153
Query: 357 STK 365
TK
Sbjct: 154 YTK 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,335,315
Number of Sequences: 369166
Number of extensions: 760113
Number of successful extensions: 2861
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2788
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2534533995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)