Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_F07
(337 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (He... 75 5e-14
sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (He... 75 5e-14
sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (He... 75 5e-14
sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HS... 74 1e-13
sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (He... 72 3e-13
sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein (He... 71 9e-13
sp|P47773|HSP7C_ICTPU Heat shock cognate 71 kDa protein 70 1e-12
sp|P54652|HSP72_HUMAN Heat shock-related 70 kDa protein 2 (... 70 2e-12
sp|P14659|HSP72_RAT Heat shock-related 70 kDa protein 2 (He... 70 2e-12
sp|P34933|HSP73_BOVIN Heat shock 70 kDa protein 3 70 2e-12
>sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|Q71U34|HSP7C_SAGOE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
(Intracellular vitamin D binding protein 1)
Length = 646
Score = 75.1 bits (183), Expect = 5e-14
Identities = 36/76 (47%), Positives = 43/76 (56%)
Frame = +3
Query: 6 IVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXXXXXXXXXXXX 185
I+DKC E I WLDKNQ A K+EF++ KELEKVCNPI+TK+YQ
Sbjct: 570 ILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGG 629
Query: 186 XXXXXXXKQGPTVEEV 233
GPT+EEV
Sbjct: 630 APPSGGASSGPTIEEV 645
>sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|P63018|HSP7C_RAT Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 75.1 bits (183), Expect = 5e-14
Identities = 36/76 (47%), Positives = 43/76 (56%)
Frame = +3
Query: 6 IVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXXXXXXXXXXXX 185
I+DKC E I WLDKNQ A K+EF++ KELEKVCNPI+TK+YQ
Sbjct: 570 ILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGG 629
Query: 186 XXXXXXXKQGPTVEEV 233
GPT+EEV
Sbjct: 630 APPSGGASSGPTIEEV 645
>sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 75.1 bits (183), Expect = 5e-14
Identities = 36/76 (47%), Positives = 43/76 (56%)
Frame = +3
Query: 6 IVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQXXXXXXXXXXXXXXXXX 185
I+DKC E I WLDKNQ A K+EF++ KELEKVCNPI+TK+YQ
Sbjct: 570 ILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGG 629
Query: 186 XXXXXXXKQGPTVEEV 233
GPT+EEV
Sbjct: 630 APPSGGASSGPTIEEV 645
>sp|P08108|HSP70_ONCMY Heat shock cognate 70 kDa protein (HSP70)
Length = 651
Score = 73.9 bits (180), Expect = 1e-13
Identities = 30/43 (69%), Positives = 38/43 (88%)
Frame = +3
Query: 6 IVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ 134
I++KC E IGWLDKNQ A K+E+++H KELEKVCNPI+TK+YQ
Sbjct: 570 ILEKCNEVIGWLDKNQTAEKEEYEHHQKELEKVCNPIITKLYQ 612
>sp|Q90473|HSP7C_BRARE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 649
Score = 72.4 bits (176), Expect = 3e-13
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +3
Query: 6 IVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ 134
I+DKC E IGWLDKNQ A ++EF++ KELEKVCNPI+TK+YQ
Sbjct: 570 ILDKCNEVIGWLDKNQTAEREEFEHQQKELEKVCNPIITKLYQ 612
>sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 650
Score = 70.9 bits (172), Expect = 9e-13
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = +3
Query: 6 IVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ 134
I+DKC E I WLDKNQ A K+EF++ KELEKVCNPI+TK+YQ
Sbjct: 570 ILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
>sp|P47773|HSP7C_ICTPU Heat shock cognate 71 kDa protein
Length = 649
Score = 70.5 bits (171), Expect = 1e-12
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = +3
Query: 6 IVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ 134
I+DKC E I WLDKNQ A KDE+++ K+LEKVCNPI+TK+YQ
Sbjct: 570 ILDKCNEVISWLDKNQTAEKDEYEHQQKDLEKVCNPIITKLYQ 612
>sp|P54652|HSP72_HUMAN Heat shock-related 70 kDa protein 2 (Heat shock 70 kDa protein 2)
Length = 639
Score = 69.7 bits (169), Expect = 2e-12
Identities = 28/43 (65%), Positives = 37/43 (86%)
Frame = +3
Query: 6 IVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ 134
I+DKCQE I WLD+NQ A KDE+++ KELE+VCNPI++K+YQ
Sbjct: 573 ILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615
>sp|P14659|HSP72_RAT Heat shock-related 70 kDa protein 2 (Heat shock protein 70.2)
(Testis-specific heat shock protein-related) (HST)
Length = 633
Score = 69.7 bits (169), Expect = 2e-12
Identities = 28/43 (65%), Positives = 37/43 (86%)
Frame = +3
Query: 6 IVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ 134
I+DKCQE I WLD+NQ A KDE+++ KELE+VCNPI++K+YQ
Sbjct: 573 ILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 615
>sp|P34933|HSP73_BOVIN Heat shock 70 kDa protein 3
Length = 631
Score = 69.7 bits (169), Expect = 2e-12
Identities = 28/43 (65%), Positives = 37/43 (86%)
Frame = +3
Query: 6 IVDKCQEAIGWLDKNQQAAKDEFDYHYKELEKVCNPIMTKMYQ 134
I+DKCQE I WLD+NQ A KDE+++ KELE+VCNPI++K+YQ
Sbjct: 568 ILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQ 610
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,545,987
Number of Sequences: 369166
Number of extensions: 233426
Number of successful extensions: 779
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 68,354,980
effective HSP length: 79
effective length of database: 53,760,915
effective search space used: 1720349280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)