Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_F01
(289 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07901|HS90A_MOUSE Heat shock protein HSP 90-alpha (HSP ... 95 6e-20
sp|P46633|HS90A_CRIGR Heat shock protein HSP 90-alpha (HSP 86) 95 6e-20
sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha (HSP 86) 94 1e-19
sp|P08238|HS90B_HUMAN Heat shock protein HSP 90-beta (HSP 8... 93 2e-19
sp|Q90474|HS90A_BRARE Heat shock protein HSP 90-alpha 93 2e-19
sp|Q9GKX8|HS90B_HORSE Heat shock protein HSP 90-beta (HSP 84) 92 3e-19
sp|O02705|HS90A_PIG Heat shock protein HSP 90-alpha (HSP 86) 92 3e-19
sp|O02192|HSP83_DROAV Heat shock protein 83 (HSP 82) 92 3e-19
sp|P11499|HS90B_MOUSE Heat shock protein HSP 90-beta (HSP 8... 92 3e-19
sp|P02828|HSP83_DROME Heat shock protein 83 (HSP 82) 92 4e-19
>sp|P07901|HS90A_MOUSE Heat shock protein HSP 90-alpha (HSP 86) (Tumor specific
transplantation 86 kDa antigen) (TSTA)
Length = 733
Score = 94.7 bits (234), Expect = 6e-20
Identities = 49/79 (62%), Positives = 62/79 (78%), Gaps = 3/79 (3%)
Frame = +1
Query: 1 DKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHRMIKLGLGIEDDDVEMDATEAG---D 171
DKSVKDLV+LLYET+LLSSGF+LEDPQ H NRI+RMIKLGLGI++DD +D T A +
Sbjct: 657 DKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTVDDTSAAVTEE 716
Query: 172 VPVVASTAEEDAGKMEEVD 228
+P + ++D +MEEVD
Sbjct: 717 MPPL--EGDDDTSRMEEVD 733
>sp|P46633|HS90A_CRIGR Heat shock protein HSP 90-alpha (HSP 86)
Length = 733
Score = 94.7 bits (234), Expect = 6e-20
Identities = 49/79 (62%), Positives = 62/79 (78%), Gaps = 3/79 (3%)
Frame = +1
Query: 1 DKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHRMIKLGLGIEDDDVEMDATEAG---D 171
DKSVKDLV+LLYET+LLSSGF+LEDPQ H NRI+RMIKLGLGI++DD +D T A +
Sbjct: 657 DKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTVDDTSAAVTEE 716
Query: 172 VPVVASTAEEDAGKMEEVD 228
+P + ++D +MEEVD
Sbjct: 717 MPPL--EGDDDTSRMEEVD 733
>sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha (HSP 86)
Length = 732
Score = 94.0 bits (232), Expect = 1e-19
Identities = 49/79 (62%), Positives = 61/79 (77%), Gaps = 3/79 (3%)
Frame = +1
Query: 1 DKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHRMIKLGLGIEDDDVEMDATEAG---D 171
DKSVKDLV+LLYET+LLSSGF+LEDPQ H NRI+RMIKLGLGI++DD D T A +
Sbjct: 656 DKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEE 715
Query: 172 VPVVASTAEEDAGKMEEVD 228
+P + ++D +MEEVD
Sbjct: 716 MPPL--EGDDDTSRMEEVD 732
>sp|P08238|HS90B_HUMAN Heat shock protein HSP 90-beta (HSP 84) (HSP 90)
Length = 724
Score = 92.8 bits (229), Expect = 2e-19
Identities = 48/79 (60%), Positives = 63/79 (79%), Gaps = 3/79 (3%)
Frame = +1
Query: 1 DKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHRMIKLGLGIEDDDV---EMDATEAGD 171
DK+VKDLV+LL+ET+LLSSGF+LEDPQ H NRI+RMIKLGLGI++D+V E +A +
Sbjct: 648 DKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVAAEEPNAAVPDE 707
Query: 172 VPVVASTAEEDAGKMEEVD 228
+P + +EDA +MEEVD
Sbjct: 708 IPPL--EGDEDASRMEEVD 724
>sp|Q90474|HS90A_BRARE Heat shock protein HSP 90-alpha
Length = 726
Score = 92.8 bits (229), Expect = 2e-19
Identities = 48/79 (60%), Positives = 61/79 (77%), Gaps = 3/79 (3%)
Frame = +1
Query: 1 DKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHRMIKLGLGIEDDD---VEMDATEAGD 171
DK+VKDLV+LL+ET+LLSSGFTL+DPQ H NRI+RMIKLGLGI+DDD E+ D
Sbjct: 650 DKAVKDLVILLFETALLSSGFTLDDPQTHANRIYRMIKLGLGIDDDDSVVEEISQPAEED 709
Query: 172 VPVVASTAEEDAGKMEEVD 228
+PV+ ++D +MEEVD
Sbjct: 710 MPVL--EGDDDTSRMEEVD 726
>sp|Q9GKX8|HS90B_HORSE Heat shock protein HSP 90-beta (HSP 84)
Length = 724
Score = 92.4 bits (228), Expect = 3e-19
Identities = 48/79 (60%), Positives = 62/79 (78%), Gaps = 3/79 (3%)
Frame = +1
Query: 1 DKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHRMIKLGLGIEDDDV---EMDATEAGD 171
DK+VKDLV+LL+ET+LLSSGF+LEDPQ H NRI+RMIKLGLGI++D+V E A +
Sbjct: 648 DKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVAAEEPSAAVPDE 707
Query: 172 VPVVASTAEEDAGKMEEVD 228
+P + +EDA +MEEVD
Sbjct: 708 IPPL--EGDEDASRMEEVD 724
>sp|O02705|HS90A_PIG Heat shock protein HSP 90-alpha (HSP 86)
Length = 733
Score = 92.4 bits (228), Expect = 3e-19
Identities = 48/79 (60%), Positives = 61/79 (77%), Gaps = 3/79 (3%)
Frame = +1
Query: 1 DKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHRMIKLGLGIEDDDVEMDATEAG---D 171
DKSVKDLV+LLYET+LLSSGF+LEDPQ H NRI+RMIKLGLGI++DD D + A +
Sbjct: 657 DKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDSSAAVTEE 716
Query: 172 VPVVASTAEEDAGKMEEVD 228
+P + ++D +MEEVD
Sbjct: 717 MPPL--EGDDDTSRMEEVD 733
>sp|O02192|HSP83_DROAV Heat shock protein 83 (HSP 82)
Length = 716
Score = 92.4 bits (228), Expect = 3e-19
Identities = 49/78 (62%), Positives = 60/78 (76%), Gaps = 2/78 (2%)
Frame = +1
Query: 1 DKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHRMIKLGLGIEDDD--VEMDATEAGDV 174
DK+VKDLV+LL+ETSLLSSGF+L+ PQVH +RI+RMIKLGLGI++D+ DA AGD
Sbjct: 640 DKAVKDLVILLFETSLLSSGFSLDSPQVHASRIYRMIKLGLGIDEDEPMTTEDAQSAGDA 699
Query: 175 PVVASTAEEDAGKMEEVD 228
P + EDA MEEVD
Sbjct: 700 PSLVEDT-EDASHMEEVD 716
>sp|P11499|HS90B_MOUSE Heat shock protein HSP 90-beta (HSP 84) (Tumor-specific
transplantation 84 kDa antigen) (TSTA)
Length = 724
Score = 92.4 bits (228), Expect = 3e-19
Identities = 48/79 (60%), Positives = 62/79 (78%), Gaps = 3/79 (3%)
Frame = +1
Query: 1 DKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHRMIKLGLGIEDDDV---EMDATEAGD 171
DK+VKDLV+LL+ET+LLSSGF+LEDPQ H NRI+RMIKLGLGI++D+V E A +
Sbjct: 648 DKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVTAEEPSAAVPDE 707
Query: 172 VPVVASTAEEDAGKMEEVD 228
+P + +EDA +MEEVD
Sbjct: 708 IPPL--EGDEDASRMEEVD 724
>sp|P02828|HSP83_DROME Heat shock protein 83 (HSP 82)
Length = 717
Score = 92.0 bits (227), Expect = 4e-19
Identities = 49/78 (62%), Positives = 60/78 (76%), Gaps = 2/78 (2%)
Frame = +1
Query: 1 DKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHRMIKLGLGIEDDD--VEMDATEAGDV 174
DK+VKDLV+LL+ETSLLSSGF+L+ PQVH +RI+RMIKLGLGI++D+ DA AGD
Sbjct: 641 DKAVKDLVILLFETSLLSSGFSLDSPQVHASRIYRMIKLGLGIDEDEPMTTDDAQSAGDA 700
Query: 175 PVVASTAEEDAGKMEEVD 228
P + EDA MEEVD
Sbjct: 701 PSLVEDT-EDASHMEEVD 717
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,921,402
Number of Sequences: 369166
Number of extensions: 377177
Number of successful extensions: 1351
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)