Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_E16
(433 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O00499|BIN1_HUMAN Myc box dependent interacting protein ... 35 0.068
sp|O08539|BIN1_MOUSE Myc box dependent-interacting protein ... 35 0.068
sp|O08839|BIN1_RAT Myc box dependent-interacting protein 1 ... 35 0.068
sp|P38041|BOB1_YEAST Protein BOB1 (BEM1-binding protein) 34 0.12
sp|P57075|UAS3_HUMAN UBASH3A protein 33 0.20
sp|Q8BKX1|BAIP2_MOUSE Brain-specific angiogenesis inhibitor... 32 0.44
sp|Q9UQB8|BAIP2_HUMAN Brain-specific angiogenesis inhibitor... 32 0.44
sp|Q6GMN2|BAIP2_RAT Brain-specific angiogenesis inhibitor 1... 32 0.44
sp|Q60437|BAIP2_CRIGR Brain-specific angiogenesis inhibitor... 32 0.44
sp|Q5EAD0|BAIP2_BOVIN Brain-specific angiogenesis inhibitor... 32 0.44
>sp|O00499|BIN1_HUMAN Myc box dependent interacting protein 1 (Bridging integrator 1)
(Amphiphysin-like protein) (Amphiphysin II)
(Box-dependent myc-interacting protein 1)
Length = 593
Score = 35.0 bits (79), Expect = 0.068
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = +1
Query: 208 YHVIAKFNYNRQXXXXXXXXXXXIIMVLPWEFEDQKEDGWLYGENVE--------TKAKG 363
+ V A+ +Y +++V+P++ +++++GWL G K +G
Sbjct: 523 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRG 582
Query: 364 LFPENHTTR 390
+FPEN T R
Sbjct: 583 VFPENFTER 591
>sp|O08539|BIN1_MOUSE Myc box dependent-interacting protein 1 (Bridging integrator 1)
(Amphiphysin-like protein) (Amphiphysin II) (SH3-domain
containing protein 9)
Length = 588
Score = 35.0 bits (79), Expect = 0.068
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = +1
Query: 208 YHVIAKFNYNRQXXXXXXXXXXXIIMVLPWEFEDQKEDGWLYGENVE--------TKAKG 363
+ V A+ +Y +++V+P++ +++++GWL G K +G
Sbjct: 518 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRG 577
Query: 364 LFPENHTTR 390
+FPEN T R
Sbjct: 578 VFPENFTER 586
>sp|O08839|BIN1_RAT Myc box dependent-interacting protein 1 (Bridging integrator 1)
(Amphiphysin-like protein) (Amphiphysin II)
Length = 588
Score = 35.0 bits (79), Expect = 0.068
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = +1
Query: 208 YHVIAKFNYNRQXXXXXXXXXXXIIMVLPWEFEDQKEDGWLYGENVE--------TKAKG 363
+ V A+ +Y +++V+P++ +++++GWL G K +G
Sbjct: 518 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRG 577
Query: 364 LFPENHTTR 390
+FPEN T R
Sbjct: 578 VFPENFTER 586
>sp|P38041|BOB1_YEAST Protein BOB1 (BEM1-binding protein)
Length = 980
Score = 34.3 bits (77), Expect = 0.12
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 304 EDQKEDGWLYGENVETKAKGLFPENHTTR 390
+ + DGW YG N+ TK +GL+P T R
Sbjct: 46 DGEYNDGWYYGRNLRTKEEGLYPAVFTKR 74
>sp|P57075|UAS3_HUMAN UBASH3A protein
Length = 661
Score = 33.5 bits (75), Expect = 0.20
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 220 AKFNYNRQXXXXXXXXXXXIIMVLPWEFEDQKEDGWLYGENVETKAKGLFPENHTTR 390
A F Y Q I V P + +D+ +GW+ G + T +G PEN+T R
Sbjct: 283 ALFQYKPQNVDELTLSPGDYIFVDPTQ-QDEASEGWVIGISQRTGCRGFLPENYTDR 338
>sp|Q8BKX1|BAIP2_MOUSE Brain-specific angiogenesis inhibitor 1-associated protein 2
(BAI1-associated protein 2) (BAI-associated protein 2)
(Insulin receptor substrate p53) (IRSp53) (Insulin
receptor substrate protein of 53 kDa) (Insulin receptor
tyrosine kinase 53 kDa substrate)
Length = 535
Score = 32.3 bits (72), Expect = 0.44
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 310 QKEDGWLYGENVETKAKGLFPENHT 384
+ DGW YGE+ +TK +G FP ++T
Sbjct: 409 EARDGWHYGESEKTKMRGWFPFSYT 433
>sp|Q9UQB8|BAIP2_HUMAN Brain-specific angiogenesis inhibitor 1-associated protein 2
(BAI1-associated protein 2) (BAI-associated protein 2)
(BAP2 protein) (Insulin receptor substrate p53) (IRSp53)
(Insulin receptor substrate protein of 53 kDa) (Insulin
receptor substrate p53/p58) (IRSp53/58) (IRS-58) (Fas
ligand-associated factor 3) (FLAF3)
Length = 552
Score = 32.3 bits (72), Expect = 0.44
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 310 QKEDGWLYGENVETKAKGLFPENHT 384
+ DGW YGE+ +TK +G FP ++T
Sbjct: 408 EARDGWHYGESEKTKMRGWFPFSYT 432
>sp|Q6GMN2|BAIP2_RAT Brain-specific angiogenesis inhibitor 1-associated protein 2
(BAI1-associated protein 2) (BAI-associated protein 2)
(Insulin receptor substrate p53) (IRSp53) (Insulin
receptor substrate protein of 53 kDa) (Insulin receptor
tyrosine kinase substrate protein p53)
Length = 535
Score = 32.3 bits (72), Expect = 0.44
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 310 QKEDGWLYGENVETKAKGLFPENHT 384
+ DGW YGE+ +TK +G FP ++T
Sbjct: 409 EARDGWHYGESEKTKMRGWFPFSYT 433
>sp|Q60437|BAIP2_CRIGR Brain-specific angiogenesis inhibitor 1-associated protein 2
(BAI1-associated protein 2) (BAI-associated protein 2)
(Insulin receptor substrate p53) (IRSp53) (Insulin
receptor substrate protein of 53 kDa) (Insulin receptor
tyrosine kinase 53 kDa substrate) (p58/p53)
Length = 521
Score = 32.3 bits (72), Expect = 0.44
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 310 QKEDGWLYGENVETKAKGLFPENHT 384
+ DGW YGE+ +TK +G FP ++T
Sbjct: 409 EARDGWHYGESEKTKMRGWFPFSYT 433
>sp|Q5EAD0|BAIP2_BOVIN Brain-specific angiogenesis inhibitor 1-associated protein 2
(BAI1-associated protein 2) (BAI-associated protein 2)
Length = 521
Score = 32.3 bits (72), Expect = 0.44
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 310 QKEDGWLYGENVETKAKGLFPENHT 384
+ DGW YGE+ +TK +G FP ++T
Sbjct: 409 EARDGWHYGESEKTKMRGWFPFSYT 433
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,432,287
Number of Sequences: 369166
Number of extensions: 822267
Number of successful extensions: 2270
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2262
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)