Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_E09
(901 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9XF63|ATL1P_ARATH RING-H2 finger protein ATL1P (RING-H2... 52 2e-06
sp|Q91YL2|RN126_MOUSE RING finger protein 126 49 1e-05
sp|Q6DIP3|RN126_XENTR RING finger protein 126 49 1e-05
sp|Q6IRP0|R126B_XENLA RING finger protein 126-B 49 2e-05
sp|Q9R049|AMFR_MOUSE Autocrine motility factor receptor (AM... 49 2e-05
sp|Q9UKV5|AMFR2_HUMAN Autocrine motility factor receptor, i... 49 2e-05
sp|Q86Y13|DZIP3_HUMAN Ubiquitin ligase protein DZIP3 (DAZ-i... 49 2e-05
sp|Q7TPV2|DZIP3_MOUSE Ubiquitin ligase protein DZIP3 (DAZ-i... 49 2e-05
sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A 48 3e-05
sp|Q9BV68|RN126_HUMAN RING finger protein 126 47 6e-05
>sp|Q9XF63|ATL1P_ARATH RING-H2 finger protein ATL1P (RING-H2 finger protein ATL3)
Length = 324
Score = 52.0 bits (123), Expect = 2e-06
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Frame = +2
Query: 17 ICREEMVAGASSGRDQPGNVPKCLPCSHIFHCACLKTWFQRQQTCPTCRMDIL--RNGQQ 190
IC E+V G D+ +PKC +H FH C+ WFQ TCP CR +L
Sbjct: 129 ICLSELVKG-----DKARLLPKC---NHSFHVECIDMWFQSHSTCPICRNTVLGPEQASS 180
Query: 191 QRTTAARPNQNGASSAPNGAQATTP-NTGTNQFPT 292
+R N A + N A + +T + +FPT
Sbjct: 181 KRVEQVPDNAENAGTTNNNHDALSQLSTSSPEFPT 215
>sp|Q91YL2|RN126_MOUSE RING finger protein 126
Length = 313
Score = 49.3 bits (116), Expect = 1e-05
Identities = 23/84 (27%), Positives = 42/84 (50%)
Frame = +2
Query: 17 ICREEMVAGASSGRDQPGNVPKCLPCSHIFHCACLKTWFQRQQTCPTCRMDILRNGQQQR 196
+C+E+ G S + LPC+H+FH +C+ W ++ +CP CR + GQ
Sbjct: 233 VCKEDYALGESVRQ---------LPCNHLFHDSCIVPWLEQHDSCPVCRKSL--TGQNTA 281
Query: 197 TTAARPNQNGASSAPNGAQATTPN 268
T G SS+ + + +++P+
Sbjct: 282 TNPPGLTGVGFSSSSSSSSSSSPS 305
>sp|Q6DIP3|RN126_XENTR RING finger protein 126
Length = 311
Score = 49.3 bits (116), Expect = 1e-05
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +2
Query: 17 ICREEMVAGASSGRDQPGNVPKCLPCSHIFHCACLKTWFQRQQTCPTCRMDILRNGQQQR 196
+C+E+ G S + LPC+H+FH C+ W ++ TCP CR + +GQ
Sbjct: 229 VCKEDYTVGESVRQ---------LPCNHLFHNDCIIPWLEQHDTCPVCRKSL--SGQNTA 277
Query: 197 TTAARPNQNGASSAPNGAQATTPNTGTN 280
T + SS+ + ++T T N
Sbjct: 278 TNPPGLTEMTFSSSSTSSSSSTSPTDEN 305
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B
Length = 312
Score = 48.9 bits (115), Expect = 2e-05
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +2
Query: 17 ICREEMVAGASSGRDQPGNVPKCLPCSHIFHCACLKTWFQRQQTCPTCRMDILRNGQQQR 196
+C+E+ G S + LPC+H+FH C+ W ++ TCP CR + +GQ
Sbjct: 230 VCKEDYTVGESVRQ---------LPCNHLFHNDCIIPWLEQHDTCPVCRKSL--SGQNTA 278
Query: 197 TT-AARPNQNGASSAPNGAQATTPNTGTN 280
T + +SS+ + + +T+P N
Sbjct: 279 TNPPGLTDMTFSSSSTSSSSSTSPTDENN 307
>sp|Q9R049|AMFR_MOUSE Autocrine motility factor receptor (AMF receptor)
Length = 643
Score = 48.9 bits (115), Expect = 2e-05
Identities = 17/38 (44%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +2
Query: 86 LPCSHIFHCACLKTWFQRQQTCPTCRMDI-LRNGQQQR 196
LPC H+FH +CL++W ++ +CPTCRM + + +G + R
Sbjct: 354 LPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIADGSRAR 391
>sp|Q9UKV5|AMFR2_HUMAN Autocrine motility factor receptor, isoform 2 (AMF receptor) (gp78)
Length = 643
Score = 48.5 bits (114), Expect = 2e-05
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = +2
Query: 86 LPCSHIFHCACLKTWFQRQQTCPTCRMDI 172
LPC H+FH +CL++W ++ +CPTCRM +
Sbjct: 354 LPCGHLFHNSCLRSWLEQDTSCPTCRMSL 382
>sp|Q86Y13|DZIP3_HUMAN Ubiquitin ligase protein DZIP3 (DAZ-interacting protein 3)
(RNA-binding ubiquitin ligase of 138 kDa) (hRUL138)
Length = 1208
Score = 48.5 bits (114), Expect = 2e-05
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +2
Query: 86 LPCSHIFHCACLKTWFQRQQTCPTCRMDIL 175
LPC+H FH C++ W +Q TCPTCR+ +L
Sbjct: 1163 LPCAHKFHAQCIRPWLMQQGTCPTCRLHVL 1192
>sp|Q7TPV2|DZIP3_MOUSE Ubiquitin ligase protein DZIP3 (DAZ-interacting protein 3 homolog)
Length = 1204
Score = 48.5 bits (114), Expect = 2e-05
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +2
Query: 86 LPCSHIFHCACLKTWFQRQQTCPTCRMDILR 178
LPC+H FH C++ W +Q TCPTCR+ +L+
Sbjct: 1159 LPCAHKFHSQCIRPWLMQQGTCPTCRLHVLQ 1189
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A
Length = 312
Score = 48.1 bits (113), Expect = 3e-05
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = +2
Query: 68 GNVPKCLPCSHIFHCACLKTWFQRQQTCPTCRMDILRNGQQQRTTAARPNQNGASSAPNG 247
G + LPC+H+FH C+ W ++ TCP CR + +GQ T ++ SS+
Sbjct: 238 GECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL--SGQNTATNPPGLSEMTFSSSSTS 295
Query: 248 AQATTPNTGTN 280
+ ++T T N
Sbjct: 296 SSSSTSPTDEN 306
>sp|Q9BV68|RN126_HUMAN RING finger protein 126
Length = 326
Score = 47.4 bits (111), Expect = 6e-05
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Frame = +2
Query: 86 LPCSHIFHCACLKTWFQRQQTCPTCRMDILRNGQQQRT--------TAARPNQNGASSAP 241
LPC+H+FH C+ W ++ +CP CR + GQ T + + + + +SS+P
Sbjct: 245 LPCNHLFHDGCIVPWLEQHDSCPVCRKSL--TGQNTATNPPGLTGVSFSSSSSSSSSSSP 302
Query: 242 NGAQATTPNTGTNQFPTTPGNV 307
+ AT G Q P N+
Sbjct: 303 SNENATWSPLGRPQPPRPLSNL 324
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,543,623
Number of Sequences: 369166
Number of extensions: 1538205
Number of successful extensions: 5102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5087
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)