Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_D15
(518 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P97742|CPT1A_MOUSE Carnitine O-palmitoyltransferase I, m... 150 2e-36
sp|Q68Y62|CPT1A_HORSE Carnitine O-palmitoyltransferase I, m... 149 4e-36
sp|P32198|CPT1A_RAT Carnitine O-palmitoyltransferase I, mit... 147 1e-35
sp|Q924X2|CPT1B_MOUSE Carnitine O-palmitoyltransferase I, m... 141 8e-34
sp|Q92523|CPT1B_HUMAN Carnitine O-palmitoyltransferase I, m... 140 1e-33
sp|P50416|CPT1A_HUMAN Carnitine O-palmitoyltransferase I, m... 140 2e-33
sp|Q63704|CPT1B_RAT Carnitine O-palmitoyltransferase I, mit... 139 5e-33
sp|Q8HY46|CPT1B_PIG Carnitine O-palmitoyltransferase I, mit... 137 2e-32
sp|Q8BGD5|CPT1C_MOUSE Carnitine O-palmitoyltransferase I, m... 131 1e-30
sp|Q8TCG5|CPT1C_HUMAN Carnitine O-palmitoyltransferase I, m... 130 1e-30
>sp|P97742|CPT1A_MOUSE Carnitine O-palmitoyltransferase I, mitochondrial liver isoform (CPT
I) (CPTI-L) (Carnitine palmitoyltransferase 1A)
Length = 773
Score = 150 bits (379), Expect = 2e-36
Identities = 75/140 (53%), Positives = 96/140 (68%)
Frame = +1
Query: 16 KIRLFRRSCDMHQFLYREAMAGNGIDRHLFALFILSKGLGYDCEFLKDVLSSPWTLSTSQ 195
+ +LF+ +C+ HQ LYR AM G GIDRHLF L+++SK L D FLK+VLS PW LSTSQ
Sbjct: 629 RFKLFKIACEKHQHLYRLAMTGAGIDRHLFCLYVVSKYLAVDSPFLKEVLSEPWRLSTSQ 688
Query: 196 QPQQQINTGIDCDLPEYRDCVGPGGGFGPVSDNGYGVAYMFPGNFRFFFHISCNKSSPET 375
PQQQ+ D +Y D V GGGFGPV+D+GYGV+Y+ G FHIS SSPET
Sbjct: 689 TPQQQVEL---FDFEKYPDYVSCGGGFGPVADDGYGVSYIIVGENFIHFHISSKFSSPET 745
Query: 376 DSNKFGDMIYKSLYDIKALF 435
DS++FG + +++ DI LF
Sbjct: 746 DSHRFGKHLRQAMMDIITLF 765
>sp|Q68Y62|CPT1A_HORSE Carnitine O-palmitoyltransferase I, mitochondrial liver isoform (CPT
I) (CPTI-L) (Carnitine palmitoyltransferase 1A)
Length = 776
Score = 149 bits (376), Expect = 4e-36
Identities = 76/140 (54%), Positives = 97/140 (69%)
Frame = +1
Query: 16 KIRLFRRSCDMHQFLYREAMAGNGIDRHLFALFILSKGLGYDCEFLKDVLSSPWTLSTSQ 195
K+RLF+ + + HQ LYR AM G+GIDRHLF L+++SK L D FLK+VLS PW LSTSQ
Sbjct: 629 KLRLFKIASEKHQHLYRLAMTGSGIDRHLFCLYVVSKYLAVDSPFLKEVLSEPWRLSTSQ 688
Query: 196 QPQQQINTGIDCDLPEYRDCVGPGGGFGPVSDNGYGVAYMFPGNFRFFFHISCNKSSPET 375
PQQQ+ DL + V GGGFGPV+D+GYGV+Y+ G FHIS SSPET
Sbjct: 689 TPQQQVEL---FDLERNPEYVSSGGGFGPVADDGYGVSYILVGENLINFHISSKFSSPET 745
Query: 376 DSNKFGDMIYKSLYDIKALF 435
DS++FG + +++ DI ALF
Sbjct: 746 DSHRFGKHLKQAMNDIMALF 765
>sp|P32198|CPT1A_RAT Carnitine O-palmitoyltransferase I, mitochondrial liver isoform (CPT
I) (CPTI-L) (Carnitine palmitoyltransferase 1A)
Length = 773
Score = 147 bits (372), Expect = 1e-35
Identities = 74/140 (52%), Positives = 96/140 (68%)
Frame = +1
Query: 16 KIRLFRRSCDMHQFLYREAMAGNGIDRHLFALFILSKGLGYDCEFLKDVLSSPWTLSTSQ 195
+++LF+ +C+ HQ LYR AM G GIDRHLF L+++SK L D FLK+VLS PW LSTSQ
Sbjct: 629 RLKLFKIACEKHQHLYRLAMTGAGIDRHLFCLYVVSKYLAVDSPFLKEVLSEPWRLSTSQ 688
Query: 196 QPQQQINTGIDCDLPEYRDCVGPGGGFGPVSDNGYGVAYMFPGNFRFFFHISCNKSSPET 375
PQQQ+ D + D V GGGFGPV+D+GYGV+Y+ G FHIS SSPET
Sbjct: 689 TPQQQVEL---FDFEKNPDYVSCGGGFGPVADDGYGVSYIIVGENFIHFHISSKFSSPET 745
Query: 376 DSNKFGDMIYKSLYDIKALF 435
DS++FG + +++ DI LF
Sbjct: 746 DSHRFGKHLRQAMMDIITLF 765
>sp|Q924X2|CPT1B_MOUSE Carnitine O-palmitoyltransferase I, mitochondrial muscle isoform (CPT
I) (CPTI-M) (Carnitine palmitoyltransferase 1B)
Length = 772
Score = 141 bits (356), Expect = 8e-34
Identities = 74/137 (54%), Positives = 94/137 (68%)
Frame = +1
Query: 25 LFRRSCDMHQFLYREAMAGNGIDRHLFALFILSKGLGYDCEFLKDVLSSPWTLSTSQQPQ 204
LFR++ + HQ +YR AM G GIDRHLF L+I+SK LG FL +VLS PW+LSTSQ PQ
Sbjct: 632 LFRKASEKHQNMYRLAMTGAGIDRHLFCLYIVSKYLGVSSPFLAEVLSEPWSLSTSQIPQ 691
Query: 205 QQINTGIDCDLPEYRDCVGPGGGFGPVSDNGYGVAYMFPGNFRFFFHISCNKSSPETDSN 384
QI D +Y + +G GGGFGPV+D+GYGV+YM G FFHIS SS ET++
Sbjct: 692 FQI---CMFDPKQYPNHLGAGGGFGPVADDGYGVSYMIAGENTMFFHISSKYSSSETNAQ 748
Query: 385 KFGDMIYKSLYDIKALF 435
+FG+ I ++L DI LF
Sbjct: 749 RFGNHIRQALLDIAELF 765
>sp|Q92523|CPT1B_HUMAN Carnitine O-palmitoyltransferase I, mitochondrial muscle isoform (CPT
I) (CPTI-M) (Carnitine palmitoyltransferase 1B)
(Carnitine palmitoyltransferase I like protein)
Length = 772
Score = 140 bits (354), Expect = 1e-33
Identities = 73/141 (51%), Positives = 94/141 (66%)
Frame = +1
Query: 25 LFRRSCDMHQFLYREAMAGNGIDRHLFALFILSKGLGYDCEFLKDVLSSPWTLSTSQQPQ 204
LF+++ HQ +YR AM G GIDRHLF L+++SK LG FL +VLS PW LSTSQ PQ
Sbjct: 632 LFQKAAKKHQNMYRLAMTGAGIDRHLFCLYLVSKYLGVSSPFLAEVLSEPWRLSTSQIPQ 691
Query: 205 QQINTGIDCDLPEYRDCVGPGGGFGPVSDNGYGVAYMFPGNFRFFFHISCNKSSPETDSN 384
QI D ++ + +G GGGFGPV+D+GYGV+YM G FFHIS SS ET++
Sbjct: 692 SQIRM---FDPEQHPNHLGAGGGFGPVADDGYGVSYMIAGENTIFFHISSKFSSSETNAQ 748
Query: 385 KFGDMIYKSLYDIKALFDGPQ 447
+FG+ I K+L DI LF P+
Sbjct: 749 RFGNHIRKALLDIADLFQVPK 769
>sp|P50416|CPT1A_HUMAN Carnitine O-palmitoyltransferase I, mitochondrial liver isoform (CPT
I) (CPTI-L) (Carnitine palmitoyltransferase 1A)
Length = 773
Score = 140 bits (353), Expect = 2e-33
Identities = 70/140 (50%), Positives = 95/140 (67%)
Frame = +1
Query: 16 KIRLFRRSCDMHQFLYREAMAGNGIDRHLFALFILSKGLGYDCEFLKDVLSSPWTLSTSQ 195
+++LF+ + + HQ +YR AM G+GIDRHLF L+++SK L + FLK+VLS PW LSTSQ
Sbjct: 629 RLKLFKLASEKHQHMYRLAMTGSGIDRHLFCLYVVSKYLAVESPFLKEVLSEPWRLSTSQ 688
Query: 196 QPQQQINTGIDCDLPEYRDCVGPGGGFGPVSDNGYGVAYMFPGNFRFFFHISCNKSSPET 375
PQQQ+ DL + V GGGFGPV+D+GYGV+Y+ G FHIS S PET
Sbjct: 689 TPQQQVEL---FDLENNPEYVSSGGGFGPVADDGYGVSYILVGENLINFHISSKFSCPET 745
Query: 376 DSNKFGDMIYKSLYDIKALF 435
DS++FG + +++ DI LF
Sbjct: 746 DSHRFGRHLKEAMTDIITLF 765
>sp|Q63704|CPT1B_RAT Carnitine O-palmitoyltransferase I, mitochondrial muscle isoform (CPT
I) (CPTI-M) (Carnitine palmitoyltransferase 1B)
(Carnitine palmitoyltransferase I-like protein)
Length = 772
Score = 139 bits (349), Expect = 5e-33
Identities = 73/137 (53%), Positives = 94/137 (68%)
Frame = +1
Query: 25 LFRRSCDMHQFLYREAMAGNGIDRHLFALFILSKGLGYDCEFLKDVLSSPWTLSTSQQPQ 204
LFR++ + HQ +YR AM G GIDRHLF L+I+SK LG FL +VLS PW+LSTSQ PQ
Sbjct: 632 LFRKASEKHQNMYRLAMTGAGIDRHLFCLYIVSKYLGVRSPFLDEVLSEPWSLSTSQIPQ 691
Query: 205 QQINTGIDCDLPEYRDCVGPGGGFGPVSDNGYGVAYMFPGNFRFFFHISCNKSSPETDSN 384
QI D +Y + +G GGGFGPV+D+GYGV+YM G FFH+S SS ET++
Sbjct: 692 FQI---CMFDPKQYPNHLGAGGGFGPVADHGYGVSYMIAGENTMFFHVSSKLSSSETNAL 748
Query: 385 KFGDMIYKSLYDIKALF 435
+FG+ I ++L DI LF
Sbjct: 749 RFGNHIRQALLDIADLF 765
>sp|Q8HY46|CPT1B_PIG Carnitine O-palmitoyltransferase I, mitochondrial muscle isoform (CPT
I) (CPTI-M) (Carnitine palmitoyltransferase 1B)
Length = 772
Score = 137 bits (345), Expect = 2e-32
Identities = 71/141 (50%), Positives = 93/141 (65%)
Frame = +1
Query: 25 LFRRSCDMHQFLYREAMAGNGIDRHLFALFILSKGLGYDCEFLKDVLSSPWTLSTSQQPQ 204
LFR++ HQ +YR AM G GIDRHLF L+++SK LG FL +VLS PW LSTSQ Q
Sbjct: 632 LFRKAAQKHQNMYRLAMTGAGIDRHLFCLYVVSKYLGVSSPFLAEVLSEPWRLSTSQIAQ 691
Query: 205 QQINTGIDCDLPEYRDCVGPGGGFGPVSDNGYGVAYMFPGNFRFFFHISCNKSSPETDSN 384
QI D +Y + +G GGGFGPV+D+GYGV+YM G FFH+S SS ET++
Sbjct: 692 FQIRM---FDPNKYPNHLGAGGGFGPVADDGYGVSYMIAGENTIFFHVSSKFSSSETNAQ 748
Query: 385 KFGDMIYKSLYDIKALFDGPQ 447
+FG+ I ++L D+ LF P+
Sbjct: 749 RFGNHIRQALLDLADLFQVPK 769
>sp|Q8BGD5|CPT1C_MOUSE Carnitine O-palmitoyltransferase I, mitochondrial brain isoform
(Carnitine palmitoyltransferase 1C) (CPT IC)
Length = 798
Score = 131 bits (329), Expect = 1e-30
Identities = 69/139 (49%), Positives = 87/139 (62%)
Frame = +1
Query: 19 IRLFRRSCDMHQFLYREAMAGNGIDRHLFALFILSKGLGYDCEFLKDVLSSPWTLSTSQQ 198
+ LFR + D HQ L + AM+G GIDRHLFAL+I+S+ L FL V S W LSTSQ
Sbjct: 625 LALFRVAVDKHQALLKAAMSGQGIDRHLFALYIMSRLLHMQSPFLTQVQSQQWLLSTSQV 684
Query: 199 PQQQINTGIDCDLPEYRDCVGPGGGFGPVSDNGYGVAYMFPGNFRFFFHISCNKSSPETD 378
P QQ + D+ Y D V GGGFGP D+GYG++Y+F G FHIS KSS ETD
Sbjct: 685 PVQQTHL---IDVHNYPDYVSSGGGFGPAHDHGYGISYIFMGENAITFHISSKKSSTETD 741
Query: 379 SNKFGDMIYKSLYDIKALF 435
S++ G I +L D+ +LF
Sbjct: 742 SHRLGQHIENALLDVASLF 760
>sp|Q8TCG5|CPT1C_HUMAN Carnitine O-palmitoyltransferase I, mitochondrial brain isoform
(Carnitine palmitoyltransferase 1C) (CPT IC)
Length = 803
Score = 130 bits (328), Expect = 1e-30
Identities = 69/143 (48%), Positives = 90/143 (62%)
Frame = +1
Query: 19 IRLFRRSCDMHQFLYREAMAGNGIDRHLFALFILSKGLGYDCEFLKDVLSSPWTLSTSQQ 198
+ LFR + D HQ L + AM+G G+DRHLFAL+I+S+ L FL V S W LSTSQ
Sbjct: 627 LALFRVAVDKHQALLKAAMSGQGVDRHLFALYIVSRFLHLQSPFLTQVHSEQWQLSTSQI 686
Query: 199 PQQQINTGIDCDLPEYRDCVGPGGGFGPVSDNGYGVAYMFPGNFRFFFHISCNKSSPETD 378
P QQ++ D+ Y D V GGGFGP D+GYGV+Y+F G+ FHIS KSS +TD
Sbjct: 687 PVQQMHL---FDVHNYPDYVSSGGGFGPADDHGYGVSYIFMGDGMITFHISSKKSSTKTD 743
Query: 379 SNKFGDMIYKSLYDIKALFDGPQ 447
S++ G I +L D+ +LF Q
Sbjct: 744 SHRLGQHIEDALLDVASLFQAGQ 766
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,568,849
Number of Sequences: 369166
Number of extensions: 1381499
Number of successful extensions: 4573
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4542
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)