Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_C19
(605 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O15027|K0310_HUMAN Protein KIAA0310 32 1.3
sp|Q9BTY2|FUCO2_HUMAN Plasma alpha-L-fucosidase precursor (... 30 3.6
sp|Q8CJ69|BMPER_MOUSE BMP-binding endothelial regulator pro... 29 8.1
sp|Q9MZV8|MC5R_PIG Melanocortin-5 receptor 29 8.1
>sp|O15027|K0310_HUMAN Protein KIAA0310
Length = 2179
Score = 32.0 bits (71), Expect = 1.3
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
Frame = +2
Query: 74 PMQFMPPPLYEIGSIWIPKLNHIDVYNSSGVDYCQGGWRKWNSAGHWDMHAMSSTAVEPD 253
P Q P Y S W + ++ Y SS DY GHWD + S+ +P
Sbjct: 1056 PRQGYPEGYYSSKSGWSSQSDYYASYYSSQYDY--------GDPGHWDRYHYSARVRDPR 1107
Query: 254 WY---HW--------KREYIRGAD---QKVMNWHYD 319
Y +W +RE+ D ++ NW YD
Sbjct: 1108 TYDRRYWCDAEYDAYRREHSAFGDRPEKRDNNWRYD 1143
>sp|Q9BTY2|FUCO2_HUMAN Plasma alpha-L-fucosidase precursor (Alpha-L-fucosidase 2)
(Alpha-L-fucoside fucohydrolase 2)
Length = 467
Score = 30.4 bits (67), Expect = 3.6
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +2
Query: 209 HWDMHAMSSTAVEPDWYHWKREYIRGADQKVMNWHYDQYAKLTQFQTYGQIF 364
HW + ++ S E W++W++E I K + + D Y +++ +G +F
Sbjct: 60 HWGVFSVPSFGSEWFWWYWQKEKI----PKYVEFMKDNYPPSFKYEDFGPLF 107
>sp|Q8CJ69|BMPER_MOUSE BMP-binding endothelial regulator protein precursor (Bone
morphogenetic protein-binding endothelial cell
precursor-derived regulator) (Crossveinless-2 protein)
(mCV2)
Length = 685
Score = 29.3 bits (64), Expect = 8.1
Identities = 25/88 (28%), Positives = 37/88 (42%)
Frame = -2
Query: 550 QIKMFYLCFGSCKWRKPIYSNWFLIGWAMINPITNRFNIPLCCFRFSSYIIDFSKYKPIV 371
Q K+F L FGSC +R +Y N G + + N +C + S+ + P V
Sbjct: 227 QRKVFDLPFGSCLFRSDVYDN----GASFVYD-----NCTVCTCKDSTMVCKKKCSHPGV 277
Query: 370 LGKYLPVCLELCQFGILVVMPVHDLLVC 287
C E C L+ +P D+ VC
Sbjct: 278 CNSDEDACCEDC----LLRVPPEDIKVC 301
>sp|Q9MZV8|MC5R_PIG Melanocortin-5 receptor
Length = 294
Score = 29.3 bits (64), Expect = 8.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 221 ACPSDLRCSIFASHLDNNLLHSNCKHLCDLV*ESIYYQFHKEEE 90
+CP +L CS F SH + L+ +C+ V + + Y F +E+
Sbjct: 255 SCPQNLYCSCFMSHFNMYLI----LIMCNSVIDPLIYAFRSQEK 294
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,770,193
Number of Sequences: 369166
Number of extensions: 1831031
Number of successful extensions: 4341
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4340
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4699949280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)