Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_C11
(892 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q12872|SFRS8_HUMAN Splicing factor, arginine/serine-rich... 50 1e-05
sp|P12297|SUWA_DROME Suppressor of white apricot protein 41 0.005
sp|Q15459|SF3A1_HUMAN Splicing factor 3 subunit 1 (Spliceos... 39 0.019
sp|Q8K4Z5|SF3A1_MOUSE Splicing factor 3 subunit 1 (SF3a120) 39 0.019
sp|Q9YHZ5|PIM1_BRARE Serine/threonine-protein kinase Pim-1 33 1.4
sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3 subunit 1 32 1.8
sp|P35236|PTN7_HUMAN Tyrosine-protein phosphatase, non-rece... 31 4.1
sp|O15015|ZN646_HUMAN Zinc finger protein 646 31 5.3
>sp|Q12872|SFRS8_HUMAN Splicing factor, arginine/serine-rich 8 (Suppressor of white
apricot protein homolog)
Length = 951
Score = 49.7 bits (117), Expect = 1e-05
Identities = 25/65 (38%), Positives = 39/65 (60%)
Frame = +2
Query: 494 VIGKMAEYVARNGVEFEQMMLARNSERFAFLLPGHASHCRYKILLDKELNKQQQQTIGRS 673
VI K+AEYVARNG++FE + A+N +RF FL P + + Y+ L K+ ++
Sbjct: 459 VIDKLAEYVARNGLKFETSVRAKNDQRFEFLQPWYQYNAYYEFKKQFFLQKEGGDSMQAV 518
Query: 674 QSPEQ 688
+PE+
Sbjct: 519 SAPEE 523
>sp|P12297|SUWA_DROME Suppressor of white apricot protein
Length = 963
Score = 40.8 bits (94), Expect = 0.005
Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Frame = +2
Query: 476 EESQDAVIGKMAEYVARNGVEFEQMMLARNSERFAFLLPG--HASHCRYKILLDKELNKQ 649
++S +I K A YV +NG +FE+ + ++ +RF+FLLP + + YK+ D + +
Sbjct: 477 KDSLRHIIDKTATYVIKNGRQFEETLRTKSVDRFSFLLPANEYYPYYLYKVTGDVDAASK 536
Query: 650 QQQTIGRSQSPEQCIASIVDSYG-----QSPPHQSSGPISFKVTSKLRTVPVR 793
+++T + ++ S+G S + P+SF + ++ P++
Sbjct: 537 EEKTRKAAAVAAALMSKKGLSFGGAAAAVSGSNLDKAPVSFSIRARDDQCPLQ 589
>sp|Q15459|SF3A1_HUMAN Splicing factor 3 subunit 1 (Spliceosome associated protein 114)
(SAP 114) (SF3a120)
Length = 793
Score = 38.9 bits (89), Expect = 0.019
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +2
Query: 494 VIGKMAEYVARNGVEFEQMMLAR--NSERFAFLLPGHASHCRYKILLDKELNKQQQQTIG 667
++ K A +VARNG EFE + N+ +F FL P H Y+ +K + G
Sbjct: 52 IVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYR-------HKVSEFKEG 104
Query: 668 RSQSPEQCIASIVDSYGQSPPHQ 736
++Q P I ++ Q+ Q
Sbjct: 105 KAQEPSAAIPKVMQQQQQTTQQQ 127
>sp|Q8K4Z5|SF3A1_MOUSE Splicing factor 3 subunit 1 (SF3a120)
Length = 791
Score = 38.9 bits (89), Expect = 0.019
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +2
Query: 494 VIGKMAEYVARNGVEFEQMMLAR--NSERFAFLLPGHASHCRYKILLDKELNKQQQQTIG 667
++ K A +VARNG EFE + N+ +F FL P H Y+ +K + G
Sbjct: 52 IVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYR-------HKVSEFKEG 104
Query: 668 RSQSPEQCIASIVDSYGQSPPHQ 736
++Q P I ++ Q+ Q
Sbjct: 105 KAQEPSAAIPKVMQQQQQATQQQ 127
>sp|Q9YHZ5|PIM1_BRARE Serine/threonine-protein kinase Pim-1
Length = 310
Score = 32.7 bits (73), Expect = 1.4
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -1
Query: 307 HFVSRFCQLDRRGRWRPRLAKRFHRIIVEVVRFQHRQGIVGIVIRFSTVFV 155
H F + RGR LA+RF + ++E V+F H +GIV I+ + V
Sbjct: 125 HCQDLFDFITERGRLDESLARRFLKQVIEAVQFCHSKGIVHRDIKDENILV 175
>sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3 subunit 1
Length = 785
Score = 32.3 bits (72), Expect = 1.8
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +2
Query: 494 VIGKMAEYVARNGVEFEQMMLARNSE--RFAFLLPGHASHCRYKILLDKELNKQQQQTIG 667
++ K A++V++NG+EFE+ ++ N + +F FL H Y+ +L + + Q
Sbjct: 71 IVEKTAQFVSKNGLEFEKRIIVSNEKNAKFNFLKSSDPYHAFYQ----HKLTEYRAQNKD 126
Query: 668 RSQSPEQCIASIVDSYGQSPPHQSSG 745
+Q + DS G + P +G
Sbjct: 127 GAQGTD-------DSDGTTDPQLDTG 145
>sp|P35236|PTN7_HUMAN Tyrosine-protein phosphatase, non-receptor type 7 (Protein-tyrosine
phosphatase LC-PTP) (Hematopoietic protein-tyrosine
phosphatase) (HEPTP)
Length = 360
Score = 31.2 bits (69), Expect = 4.1
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +2
Query: 587 LPGHASHCRYKILLDKELNKQQQQTIGRSQSPE 685
+PGHAS RYK +L N Q + +GR+QS E
Sbjct: 116 IPGHASKDRYKTILP---NPQSRVCLGRAQSQE 145
>sp|O15015|ZN646_HUMAN Zinc finger protein 646
Length = 1829
Score = 30.8 bits (68), Expect = 5.3
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 536 EFEQMMLARNSERF-AFLLPGHASHCRYKILLDKELNKQQQQTIGRSQSP 682
EF +M +N R A P H HC L +EL + QQ G Q P
Sbjct: 274 EFSNLMALKNHSRLHAQYRPYHCPHCPRVFRLpreLLEHQQSHEGERQEP 323
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,614,044
Number of Sequences: 369166
Number of extensions: 1823918
Number of successful extensions: 5024
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5023
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)