Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_C06
(359 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51397|DAP1_HUMAN Death-associated protein 1 (DAP-1) 35 0.069
sp|Q91XC8|DAP1_MOUSE Death-associated protein 1 (DAP-1) 33 0.20
sp|Q9QX67|DAP1_RAT Death-associated protein 1 (DAP-1) (Rap7a) 33 0.26
sp|O95630|STABP_HUMAN STAM-binding protein (Associated mole... 31 0.76
sp|O74676|CDR4_CANAL ABC transporter CDR4 29 2.9
sp|P28920|VCAP_EHV1B Major capsid protein (MCP) (Capsid pro... 29 3.8
sp|Q6S6S9|VCAP_EHV1V Major capsid protein (MCP) (Capsid pro... 29 3.8
sp|O73700|CAC1D_CHICK Voltage-dependent L-type calcium chan... 28 6.4
sp|P13563|HAS1_XENLA Hyaluronan synthase 1 (Hyaluronate syn... 28 8.4
sp|P24873|NU6M_ASCSU NADH-ubiquinone oxidoreductase chain 6... 28 8.4
>sp|P51397|DAP1_HUMAN Death-associated protein 1 (DAP-1)
Length = 102
Score = 34.7 bits (78), Expect = 0.069
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +1
Query: 76 TSEEIRKQEEEYGTEVQPTIGAEIIPGVEIDEKKAYPTEAVKAYHNKPIPTHNKPNKPVP 255
T EE K ++E+ + P I GV K +P A + H KP + +K P
Sbjct: 36 TKEEKDKDDQEWESPSPPK-PTVFISGVIARGDKDFPPAAAQVAHQKPHASMDKHPSPRT 94
Query: 256 HHINQPR 276
HI QPR
Sbjct: 95 QHIQQPR 101
>sp|Q91XC8|DAP1_MOUSE Death-associated protein 1 (DAP-1)
Length = 102
Score = 33.1 bits (74), Expect = 0.20
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +1
Query: 97 QEEEYGTEVQPTIGAEIIPGVEIDEKKAYPTEAVKAYHNKPIPTHNKPNKPVPHHINQPR 276
QE E + +PT+ I GV K +P A + H KP + +K P HI QPR
Sbjct: 45 QEWESTSPPKPTV---FISGVIARGDKDFPPAAAQVAHQKPHASMDKHVSPRTQHIQQPR 101
>sp|Q9QX67|DAP1_RAT Death-associated protein 1 (DAP-1) (Rap7a)
Length = 102
Score = 32.7 bits (73), Expect = 0.26
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +1
Query: 97 QEEEYGTEVQPTIGAEIIPGVEIDEKKAYPTEAVKAYHNKPIPTHNKPNKPVPHHINQPR 276
QE E + +PT+ I GV K +P A + H KP + +K P HI QPR
Sbjct: 45 QEWESTSPPKPTV---YISGVIARGDKDFPPAAAQVAHQKPHASMDKHVSPRTQHIQQPR 101
>sp|O95630|STABP_HUMAN STAM-binding protein (Associated molecule with the SH3 domain of
STAM)
Length = 424
Score = 31.2 bits (69), Expect = 0.76
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +1
Query: 67 EKITSEEIRKQE----EEYGTEVQPTIGAEIIPGVEIDEKKAYPTEAVKAYHNKPIPTHN 234
E I ++E+ K+ +E+G +V P +G ++P +E +PT V + T
Sbjct: 167 EMIRNQELEKERLKIVQEFG-KVDPGLGGPLVPDLEKPSLDVFPTLTVSSIQPSDCHTTV 225
Query: 235 KPNKP 249
+P KP
Sbjct: 226 RPAKP 230
>sp|O74676|CDR4_CANAL ABC transporter CDR4
Length = 1490
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 177 LLFIDFNTRYYFSSYSRLHFGSIFFFLLTNF 85
++ I FN YYF R G+ FF+LL NF
Sbjct: 606 IIAIGFNLVYYFMVNFRRTPGNFFFYLLINF 636
>sp|P28920|VCAP_EHV1B Major capsid protein (MCP) (Capsid protein VP5)
Length = 1376
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +1
Query: 148 IPGVEIDEKKAYPTEAVKAYHNKPIPTHNKPNKPVPHH 261
IP VE+ E + HN+PI NK N VPHH
Sbjct: 766 IPWVEMAEVN-FGNTGGHLVHNRPIRGENKRNPIVPHH 802
>sp|Q6S6S9|VCAP_EHV1V Major capsid protein (MCP) (Capsid protein VP5)
Length = 1376
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +1
Query: 148 IPGVEIDEKKAYPTEAVKAYHNKPIPTHNKPNKPVPHH 261
IP VE+ E + HN+PI NK N VPHH
Sbjct: 766 IPWVEMAEVN-FGNTGGHLVHNRPIRGENKRNPIVPHH 802
>sp|O73700|CAC1D_CHICK Voltage-dependent L-type calcium channel alpha-1D subunit
(Voltage-gated calcium channel alpha subunit Cav1.3)
(CHCACHA1D)
Length = 2190
Score = 28.1 bits (61), Expect = 6.4
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +1
Query: 148 IPGVEIDEKKAYPTEAVKAYHNKPIPTHNKPNKPVPHHIN 267
IP EK YP YHN HN K VP+ N
Sbjct: 1747 IPSASDTEKNIYPHTGNSVYHNH--HNHNSVGKQVPNSTN 1784
>sp|P13563|HAS1_XENLA Hyaluronan synthase 1 (Hyaluronate synthase 1) (Hyaluronic acid
synthase 1) (HA synthase 1) (xHAS1) (DG42 protein)
Length = 588
Score = 27.7 bits (60), Expect = 8.4
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -3
Query: 309 VTITI*NVIYLSGLINMMWHRLIRLVMSWYRLIMVSFYRFSRICLLFIDFNTRYYFSSYS 130
+T T+ +IY + N++W L +MS ++ I + R + I LL S YS
Sbjct: 418 ITATVIRLIYAGTIWNVVWLLLCIQIMSLFKSIYACWLRGNFIMLL---------MSLYS 468
Query: 129 RLHFGSI----FFFLLT 91
L+ + +F LLT
Sbjct: 469 MLYMTGLLPSKYFALLT 485
>sp|P24873|NU6M_ASCSU NADH-ubiquinone oxidoreductase chain 6 (NADH dehydrogenase subunit
6)
Length = 144
Score = 27.7 bits (60), Expect = 8.4
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -3
Query: 246 LIRLVMSWYRLIMVSFYRFSRICLLFID--FNTRYYFSSYSRLHFGSIFFFLLTNFLRCY 73
++ ++S++ + S++ ICLLF+ F YFSS S++ + F+ + L +
Sbjct: 35 MVMPLISFFLHVWFSYF----ICLLFLSGIFVILVYFSSLSKIGYVVTPFYFVGGVLSVF 90
Query: 72 FF 67
FF
Sbjct: 91 FF 92
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,797,816
Number of Sequences: 369166
Number of extensions: 650933
Number of successful extensions: 2097
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2093
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)