Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_C05
(541 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 361 e-100
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 360 e-100
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 360 1e-99
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 360 2e-99
sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin) 360 2e-99
sp|P30436|TBA_ONCKE Tubulin alpha chain 359 3e-99
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 359 3e-99
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 359 3e-99
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 358 5e-99
sp|P52273|TBA_BOMMO Tubulin alpha chain 358 5e-99
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 361 bits (926), Expect = e-100
Identities = 174/178 (97%), Positives = 177/178 (99%)
Frame = +1
Query: 7 GSGFTSLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVD 186
GSGFTSLLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVD
Sbjct: 146 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVD 205
Query: 187 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 366
NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI
Sbjct: 206 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 265
Query: 367 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV 540
HFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV
Sbjct: 266 HFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV 323
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 360 bits (925), Expect = e-100
Identities = 174/178 (97%), Positives = 177/178 (99%)
Frame = +1
Query: 7 GSGFTSLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVD 186
GSGF SLLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVD
Sbjct: 146 GSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVD 205
Query: 187 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 366
NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI
Sbjct: 206 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 265
Query: 367 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV 540
HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV
Sbjct: 266 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV 323
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 360 bits (924), Expect = 1e-99
Identities = 173/178 (97%), Positives = 178/178 (100%)
Frame = +1
Query: 7 GSGFTSLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVD 186
GSGFTSLLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVD
Sbjct: 146 GSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVD 205
Query: 187 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 366
NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI
Sbjct: 206 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 265
Query: 367 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV 540
HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDV
Sbjct: 266 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDV 323
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 360 bits (923), Expect = 2e-99
Identities = 173/178 (97%), Positives = 177/178 (99%)
Frame = +1
Query: 7 GSGFTSLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVD 186
GSGFTSLLMERLSVDYGKKSKLEFA+YPAPQ+ATAVVEPYNSILTTHTTLEHSDCAFMVD
Sbjct: 146 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVD 205
Query: 187 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 366
NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI
Sbjct: 206 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 265
Query: 367 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV 540
HFPL TYAPVISAEKAYHEQLSV+EITNACFEPANQMVKCDPRHGKYMACC+LYRGDV
Sbjct: 266 HFPLVTYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDV 323
>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin)
Length = 451
Score = 360 bits (923), Expect = 2e-99
Identities = 174/178 (97%), Positives = 177/178 (99%)
Frame = +1
Query: 7 GSGFTSLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVD 186
GSGFTSLLMERLSVDYGKKSKLEFAVYPAPQ+ATAVVEPYNSILTTHTTLEHSDCAFMVD
Sbjct: 146 GSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVD 205
Query: 187 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 366
NEAIYDICRRNLDIERP+YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI
Sbjct: 206 NEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 265
Query: 367 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV 540
HFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDV
Sbjct: 266 HFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDV 323
>sp|P30436|TBA_ONCKE Tubulin alpha chain
Length = 444
Score = 359 bits (921), Expect = 3e-99
Identities = 173/178 (97%), Positives = 178/178 (100%)
Frame = +1
Query: 7 GSGFTSLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVD 186
GSGFTSLLMERLSVDYGKKSKLEFAVYPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVD
Sbjct: 140 GSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVD 199
Query: 187 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 366
NEAIYDICRRNLDIERP+YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI
Sbjct: 200 NEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 259
Query: 367 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV 540
HFPLATYAPVISAEKAYHEQLSVA+ITNACFEPANQMVKCDPRHGKYMACC+LYRGDV
Sbjct: 260 HFPLATYAPVISAEKAYHEQLSVADITNACFEPANQMVKCDPRHGKYMACCLLYRGDV 317
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 359 bits (921), Expect = 3e-99
Identities = 173/178 (97%), Positives = 178/178 (100%)
Frame = +1
Query: 7 GSGFTSLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVD 186
GSGF+SLLMERLSVDYGKKSKLEFA+YPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVD
Sbjct: 146 GSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVD 205
Query: 187 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 366
NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI
Sbjct: 206 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 265
Query: 367 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV 540
HFPLATYAPVISAEKAYHEQL+VAEITNACFEPANQMVKCDPRHGKYM+CCMLYRGDV
Sbjct: 266 HFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDV 323
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 359 bits (921), Expect = 3e-99
Identities = 173/178 (97%), Positives = 178/178 (100%)
Frame = +1
Query: 7 GSGFTSLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVD 186
GSGFTSLLMERLSVDYGKKSKLEF+VYPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVD
Sbjct: 146 GSGFTSLLMERLSVDYGKKSKLEFSVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVD 205
Query: 187 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 366
NEAIYDICRRNLDIERP+YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI
Sbjct: 206 NEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 265
Query: 367 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV 540
HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ+VKCDPRHGKYMACCMLYRGDV
Sbjct: 266 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDV 323
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 358 bits (919), Expect = 5e-99
Identities = 173/178 (97%), Positives = 178/178 (100%)
Frame = +1
Query: 7 GSGFTSLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVD 186
GSGF+SLLMERLSVDYGKKSKLEFAVYPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVD
Sbjct: 146 GSGFSSLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVD 205
Query: 187 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 366
NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI
Sbjct: 206 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 265
Query: 367 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV 540
HFPLATYAPVISAEKAYHEQL+V+EITNACFEPANQMVKCDPRHGKYMACC+LYRGDV
Sbjct: 266 HFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDV 323
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 358 bits (919), Expect = 5e-99
Identities = 173/178 (97%), Positives = 176/178 (98%)
Frame = +1
Query: 7 GSGFTSLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVD 186
GSGFTSLLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVD
Sbjct: 146 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVD 205
Query: 187 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 366
NEAIYDICRRNLDIE PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI
Sbjct: 206 NEAIYDICRRNLDIEPPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRI 265
Query: 367 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV 540
HFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV
Sbjct: 266 HFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDV 323
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,056,625
Number of Sequences: 369166
Number of extensions: 1398391
Number of successful extensions: 3849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3791
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3685690500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)