Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_C02
(691 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic 428 e-120
sp|P92176|ACT2_LUMTE Actin-2 427 e-119
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 426 e-119
sp|P92179|ACTC_BIOGL Actin, cytoplasmic 426 e-119
sp|P07837|ACT2_BOMMO Actin, muscle A2 426 e-119
sp|Q964D9|ACTC_HELTI Actin, cytoplasmic 426 e-119
sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic 426 e-119
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 425 e-119
sp|Q26065|ACT_PLAMG Actin, adductor muscle 424 e-119
sp|P02578|ACT1_ACACA Actin-1 424 e-118
>sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic
Length = 376
Score = 428 bits (1101), Expect = e-120
Identities = 216/230 (93%), Positives = 218/230 (94%), Gaps = 1/230 (0%)
Frame = +3
Query: 3 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 182
ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
Query: 183 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 362
LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 363 FNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLT 542
FN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI RLDLAGRDLT
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLT 187
Query: 543 DYLMKILTERGYSFTTTAEREIVRDIKEN-CLM*LVV**RMHTASLSSSL 689
DYLMKILTERGYSFTTTAEREIVRDIKE C + L MHTA+ SSSL
Sbjct: 188 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMHTAATSSSL 237
>sp|P92176|ACT2_LUMTE Actin-2
Length = 376
Score = 427 bits (1097), Expect = e-119
Identities = 216/230 (93%), Positives = 218/230 (94%), Gaps = 1/230 (0%)
Frame = +3
Query: 3 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 182
ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
Query: 183 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 362
LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 363 FNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLT 542
FN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI RLDLAGRDLT
Sbjct: 128 FNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLT 187
Query: 543 DYLMKILTERGYSFTTTAEREIVRDIKEN-CLM*LVV**RMHTASLSSSL 689
DYLMKILTERGYSFTTTAEREIVRDIKE C + L M+TAS SSSL
Sbjct: 188 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMNTASASSSL 237
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 426 bits (1096), Expect = e-119
Identities = 216/230 (93%), Positives = 217/230 (94%), Gaps = 1/230 (0%)
Frame = +3
Query: 3 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 182
ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
Query: 183 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 362
LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 363 FNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLT 542
FN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI RLDLAGRDLT
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLT 187
Query: 543 DYLMKILTERGYSFTTTAEREIVRDIKEN-CLM*LVV**RMHTASLSSSL 689
DYLMKILTERGYSFTTTAEREIVRDIKE C + L M TAS SSSL
Sbjct: 188 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSL 237
>sp|P92179|ACTC_BIOGL Actin, cytoplasmic
Length = 376
Score = 426 bits (1094), Expect = e-119
Identities = 215/230 (93%), Positives = 217/230 (94%), Gaps = 1/230 (0%)
Frame = +3
Query: 3 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 182
ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
Query: 183 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 362
LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 363 FNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLT 542
FN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAI RLDLAGRDLT
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLT 187
Query: 543 DYLMKILTERGYSFTTTAEREIVRDIKEN-CLM*LVV**RMHTASLSSSL 689
DYLMKILTERGYSFTTTAEREIVRDIKE C + L M TAS SSSL
Sbjct: 188 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSL 237
>sp|P07837|ACT2_BOMMO Actin, muscle A2
Length = 376
Score = 426 bits (1094), Expect = e-119
Identities = 212/230 (92%), Positives = 218/230 (94%), Gaps = 1/230 (0%)
Frame = +3
Query: 3 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 182
ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
Query: 183 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 362
LKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFET 127
Query: 363 FNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLT 542
FNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI RLDLAGRDLT
Sbjct: 128 FNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 187
Query: 543 DYLMKILTERGYSFTTTAEREIVRDIKEN-CLM*LVV**RMHTASLSSSL 689
DYLMKILTERGYSFTTTAEREIVRDIKE C + L M TA+ S+SL
Sbjct: 188 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAAASTSL 237
>sp|Q964D9|ACTC_HELTI Actin, cytoplasmic
Length = 376
Score = 426 bits (1094), Expect = e-119
Identities = 215/230 (93%), Positives = 217/230 (94%), Gaps = 1/230 (0%)
Frame = +3
Query: 3 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 182
ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
Query: 183 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 362
LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 363 FNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLT 542
FN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAI RLDLAGRDLT
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGIVIDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLT 187
Query: 543 DYLMKILTERGYSFTTTAEREIVRDIKEN-CLM*LVV**RMHTASLSSSL 689
DYLMKILTERGYSFTTTAEREIVRDIKE C + L M TAS SSSL
Sbjct: 188 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSL 237
>sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic
Length = 376
Score = 426 bits (1094), Expect = e-119
Identities = 215/230 (93%), Positives = 217/230 (94%), Gaps = 1/230 (0%)
Frame = +3
Query: 3 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 182
ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
Query: 183 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 362
LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 363 FNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLT 542
FN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAI RLDLAGRDLT
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLT 187
Query: 543 DYLMKILTERGYSFTTTAEREIVRDIKEN-CLM*LVV**RMHTASLSSSL 689
DYLMKILTERGYSFTTTAEREIVRDIKE C + L M TAS SSSL
Sbjct: 188 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSL 237
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 425 bits (1092), Expect = e-119
Identities = 215/230 (93%), Positives = 217/230 (94%), Gaps = 1/230 (0%)
Frame = +3
Query: 3 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 182
ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
Query: 183 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 362
LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 363 FNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLT 542
FN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI RLDLAGRDLT
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLT 187
Query: 543 DYLMKILTERGYSFTTTAEREIVRDIKEN-CLM*LVV**RMHTASLSSSL 689
DYLMKILTERGYSFTTTAEREIVRDIKE C + L M TA+ SSSL
Sbjct: 188 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTATSSSSL 237
>sp|Q26065|ACT_PLAMG Actin, adductor muscle
Length = 376
Score = 424 bits (1091), Expect = e-119
Identities = 215/230 (93%), Positives = 217/230 (94%), Gaps = 1/230 (0%)
Frame = +3
Query: 3 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 182
ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
Query: 183 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 362
LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 363 FNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLT 542
FN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI RLDLAGRDLT
Sbjct: 128 FNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLT 187
Query: 543 DYLMKILTERGYSFTTTAEREIVRDIKEN-CLM*LVV**RMHTASLSSSL 689
DYLMKILTERGYSFTTTAEREIVRDIKE C + L M TA+ SSSL
Sbjct: 188 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFENEMATAASSSSL 237
>sp|P02578|ACT1_ACACA Actin-1
Length = 375
Score = 424 bits (1090), Expect = e-118
Identities = 213/230 (92%), Positives = 217/230 (94%), Gaps = 1/230 (0%)
Frame = +3
Query: 3 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 182
ALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQSKRGILT
Sbjct: 7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILT 66
Query: 183 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 362
LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET
Sbjct: 67 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 126
Query: 363 FNCPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAICRLDLAGRDLT 542
FN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI RLDLAGRDLT
Sbjct: 127 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLT 186
Query: 543 DYLMKILTERGYSFTTTAEREIVRDIKEN-CLM*LVV**RMHTASLSSSL 689
DYLMKILTERGYSFTTTAEREIVRDIKE C + L MHTA+ SS+L
Sbjct: 187 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMHTAASSSAL 236
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,239,546
Number of Sequences: 369166
Number of extensions: 1527053
Number of successful extensions: 4418
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4326
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5927776870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)