Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_B18
(276 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H1E5|TXD13_HUMAN Thioredoxin domain-containing protein... 33 0.16
sp|P36076|YKI8_YEAST Hypothetical protein YKL088w 32 0.46
sp|Q01033|VG48_SHV21 Hypothetical gene 48 protein 31 0.78
sp|Q05021|TAF7_YEAST Transcription initiation factor TFIID ... 31 1.0
sp|O60841|IF2P_HUMAN Eukaryotic translation initiation fact... 31 1.0
sp|P82970|NSBP1_HUMAN Nucleosomal binding protein 1 30 1.3
sp|Q8LFV3|DOF33_ARATH Dof zinc finger protein DOF3.3 (AtDOF... 30 1.7
sp|P36100|T2EA_YEAST Transcription initiation factor IIE al... 30 2.3
sp|Q08236|YOH8_YEAST Hypothetical 131.4 kDa protein in REX4... 30 2.3
sp|P11075|SEC7_YEAST Protein transport protein SEC7 30 2.3
>sp|Q9H1E5|TXD13_HUMAN Thioredoxin domain-containing protein 13 precursor
Length = 349
Score = 33.5 bits (75), Expect = 0.16
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 17/64 (26%)
Frame = +1
Query: 1 DINEE-------DDEEDKREAGDNVHEEV----------VQESISEMNNEGARGDEAISK 129
D NEE DDEE+K + GD E V E SE N++G G++ +++
Sbjct: 250 DSNEEENKDSLVDDEEEKEDLGDEDEAEEEEEEDNLAAGVDEERSEANDQGPPGEDGVTR 309
Query: 130 SELE 141
E+E
Sbjct: 310 EEVE 313
>sp|P36076|YKI8_YEAST Hypothetical protein YKL088w
Length = 571
Score = 32.0 bits (71), Expect = 0.46
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 1 DINEEDDEEDKREAGDNVHEEVVQESIS-EMNNEGARGDEAISKSEL 138
D ++DDE+D+ + D EE + E+ S E N+E DE K+E+
Sbjct: 525 DNEDDDDEDDEEDEEDEEEEEALNETASDESNDEEDEEDEEDVKTEV 571
>sp|Q01033|VG48_SHV21 Hypothetical gene 48 protein
Length = 797
Score = 31.2 bits (69), Expect = 0.78
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 10 EEDDEEDKREAGDNVHEEVVQESISEMNNEGARGDE 117
+E+DE+D++E G++ ++ E E +EG GDE
Sbjct: 423 DEEDEKDEKEEGEDEGDDGEDEGEDEGEDEGDEGDE 458
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 13 EDDEEDKREAGDNVHEEVVQESISEMNNEGARGDE 117
ED+ ED+ + G++ E+ E E +EG GDE
Sbjct: 580 EDEGEDEGDEGEDEGEDEGDEGEDEGEDEGDEGDE 614
>sp|Q05021|TAF7_YEAST Transcription initiation factor TFIID subunit 7 (TBP-associated
factor 7) (TBP-associated factor 67 kDa) (TAFII-67)
Length = 590
Score = 30.8 bits (68), Expect = 1.0
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 1 DINEEDDEEDKREAGDNVHE-EVVQESISEMNNEGARGDEAISKSELE 141
D +EEDDEE+ E DNVHE E +QE+ + A +E + +++L+
Sbjct: 533 DEDEEDDEEND-EDEDNVHEREHIQENKVVRELDEAPAEETLDQNDLD 579
>sp|O60841|IF2P_HUMAN Eukaryotic translation initiation factor 5B (eIF-5B) (Translation
initiation factor IF-2)
Length = 1220
Score = 30.8 bits (68), Expect = 1.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 1 DINEEDDEEDKREAGDNVHEEVVQESISEMNNEGARGDEAISK 129
++ E +EE++ E + EE +E E +EG+ GDE K
Sbjct: 526 EVKENPEEEEEEEEEEEEDEESEEEEEEEGESEGSEGDEEDEK 568
Score = 29.3 bits (64), Expect = 3.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 10 EEDDEEDKREAGDNVHEEVVQESISEMNNEGARGDEAIS 126
EE++EE++ E D EE +E +EG DE +S
Sbjct: 532 EEEEEEEEEEEEDEESEEEEEEEGESEGSEGDEEDEKVS 570
>sp|P82970|NSBP1_HUMAN Nucleosomal binding protein 1
Length = 282
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 7 NEEDDEEDKREAGDNVHEEVVQESISEMNNEGARGDEAISKSE 135
+EED E+K EAG +E +E E N +G++A K +
Sbjct: 133 DEEDQNEEKGEAGKEDKDEKGEEDGKEDKNGNEKGEDAKEKED 175
>sp|Q8LFV3|DOF33_ARATH Dof zinc finger protein DOF3.3 (AtDOF3.3) (H-protein promoter
binding factor 2a)
Length = 448
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 4 INEEDDEEDKREAGDNVHEEVVQESISEMNNEGARGDEAISKSELE 141
+ EDDEED GD+ E V +S+ NN D + + S+ E
Sbjct: 27 VTVEDDEEDDWSGGDDKSPEKVTPELSDKNNNNC-NDNSFNNSKPE 71
>sp|P36100|T2EA_YEAST Transcription initiation factor IIE alpha subunit (TFIIE-alpha)
(Transcription factor A large subunit) (Factor A 66 kDa
subunit)
Length = 482
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 4 INEEDDEEDKREAGDNVHEEVVQESISEMNNEGAR 108
+N+E++EE++ E + EE E + + N+E AR
Sbjct: 371 LNKEEEEEEEEEEDEEEEEEEEMEDVMDDNDETAR 405
>sp|Q08236|YOH8_YEAST Hypothetical 131.4 kDa protein in REX4-ATP19 intergenic region
Length = 1176
Score = 29.6 bits (65), Expect = 2.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 1 DINEEDDEEDKREAGDNVHEEVVQ 72
++ EEDD++D E GD++H + Q
Sbjct: 240 NLEEEDDDDDDDEEGDDIHSQFFQ 263
>sp|P11075|SEC7_YEAST Protein transport protein SEC7
Length = 2009
Score = 29.6 bits (65), Expect = 2.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 10 EEDDEEDKREAGDNVHEEVVQESISEMNNEGARGDEAISKSELE 141
+ED++ED+ E + +E V S SE ++E E++S E
Sbjct: 98 DEDEDEDEDEDNGDEDDEDVDSSSSETSSEDGEDSESVSGESTE 141
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.296 0.121 0.323
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,442,278
Number of Sequences: 369166
Number of extensions: 408656
Number of successful extensions: 1712
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1575
length of database: 68,354,980
effective HSP length: 61
effective length of database: 57,086,145
effective search space used: 1712584350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)