Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_B17
(466 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 73 3e-13
sp|P62169|CSPC_BACAN Cold shock-like protein cspC >gi|49061... 70 2e-12
sp|Q00436|YB3_XENLA B box binding protein (YB3 protein) 69 5e-12
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 69 5e-12
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 68 9e-12
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 68 9e-12
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 68 9e-12
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 68 9e-12
sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmi... 68 9e-12
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 67 2e-11
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 73.2 bits (178), Expect = 3e-13
Identities = 38/65 (58%), Positives = 46/65 (70%), Gaps = 4/65 (6%)
Frame = +2
Query: 2 VSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVVQGS 169
VSG VKWFN KSGYGFI R+D + DVFVH ++I N S+ DGE+V+FDVV+G
Sbjct: 33 VSGTVKWFNVKSGYGFINRDDTKE-DVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGE 91
Query: 170 KGLEA 184
KG EA
Sbjct: 92 KGNEA 96
>sp|P62169|CSPC_BACAN Cold shock-like protein cspC
sp|P62170|CSPC_BACCE Cold shock-like protein cspC
sp|P62171|CSPC_BACCR Cold shock-like protein cspC
Length = 65
Score = 70.5 bits (171), Expect = 2e-12
Identities = 31/61 (50%), Positives = 46/61 (75%)
Frame = +2
Query: 2 VSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATNANSLADGEEVQFDVVQGSKGLE 181
+ G VKWFN++ G+GFI+REDG+ DVFVH S+I SL +G++V+FD+V G++G +
Sbjct: 1 MQGRVKWFNAEKGFGFIEREDGD--DVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQ 58
Query: 182 A 184
A
Sbjct: 59 A 59
>sp|Q00436|YB3_XENLA B box binding protein (YB3 protein)
Length = 305
Score = 68.9 bits (167), Expect = 5e-12
Identities = 40/94 (42%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Frame = +2
Query: 2 VSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVVQGS 169
V G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G
Sbjct: 37 VLGTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95
Query: 170 KGLEARXXXXXXXXXXXXXKPFFQQNDNRSYGNR 271
KG EA K +N+ R Y R
Sbjct: 96 KGAEAANVTGPGPVPVQGSKYAADRNNYRRYPRR 129
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 68.9 bits (167), Expect = 5e-12
Identities = 35/65 (53%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Frame = +2
Query: 2 VSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVVQGS 169
V G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDSKE-DVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGE 100
Query: 170 KGLEA 184
KG EA
Sbjct: 101 KGAEA 105
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 68.2 bits (165), Expect = 9e-12
Identities = 40/94 (42%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Frame = +2
Query: 2 VSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVVQGS 169
V G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G
Sbjct: 37 VLGTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95
Query: 170 KGLEARXXXXXXXXXXXXXKPFFQQNDNRSYGNR 271
KG EA K +N R Y R
Sbjct: 96 KGAEAANVTGPEGVPVQGSKYAADRNHYRRYPRR 129
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 68.2 bits (165), Expect = 9e-12
Identities = 40/94 (42%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Frame = +2
Query: 2 VSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVVQGS 169
V G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G
Sbjct: 57 VLGTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 115
Query: 170 KGLEARXXXXXXXXXXXXXKPFFQQNDNRSYGNR 271
KG EA K +N R Y R
Sbjct: 116 KGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRR 149
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 68.2 bits (165), Expect = 9e-12
Identities = 40/94 (42%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Frame = +2
Query: 2 VSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVVQGS 169
V G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G
Sbjct: 59 VLGTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 117
Query: 170 KGLEARXXXXXXXXXXXXXKPFFQQNDNRSYGNR 271
KG EA K +N R Y R
Sbjct: 118 KGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRR 151
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 68.2 bits (165), Expect = 9e-12
Identities = 40/94 (42%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Frame = +2
Query: 2 VSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVVQGS 169
V G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G
Sbjct: 56 VLGTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114
Query: 170 KGLEARXXXXXXXXXXXXXKPFFQQNDNRSYGNR 271
KG EA K +N R Y R
Sbjct: 115 KGAEAANVTGPGGVPVQGSKYAADRNHYRRYPRR 148
>sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmic RNA-binding protein p56)
(mRNP4)
Length = 336
Score = 68.2 bits (165), Expect = 9e-12
Identities = 35/65 (53%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Frame = +2
Query: 2 VSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVVQGS 169
V G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G
Sbjct: 42 VQGTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGE 100
Query: 170 KGLEA 184
KG EA
Sbjct: 101 KGAEA 105
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 67.4 bits (163), Expect = 2e-11
Identities = 35/65 (53%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Frame = +2
Query: 2 VSGHVKWFNSKSGYGFIQREDGNDSDVFVHHSSIAATN----ANSLADGEEVQFDVVQGS 169
V G VKWFN ++GYGFI R D + DVFVH ++I N S+ DGE V+FDVV+G
Sbjct: 83 VLGTVKWFNVRNGYGFINRNDTKE-DVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 141
Query: 170 KGLEA 184
KG EA
Sbjct: 142 KGAEA 146
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,527,261
Number of Sequences: 369166
Number of extensions: 743365
Number of successful extensions: 1843
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1771
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2633927485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)