Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_B16
(818 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04446|GLGB_HUMAN 1,4-alpha-glucan branching enzyme (Gly... 426 e-119
sp|Q9D6Y9|GLGB_MOUSE 1,4-alpha-glucan branching enzyme (Gly... 422 e-118
sp|Q5KP87|GLGB_CRYNE 1,4-alpha-glucan branching enzyme (Gly... 394 e-109
sp|Q8NKE1|GLGB_GLOIN 1,4-alpha-glucan branching enzyme (Gly... 390 e-108
sp|P30924|GLGB_SOLTU 1,4-alpha-glucan branching enzyme (Sta... 381 e-105
sp|Q08047|GLGB_MAIZE 1,4-alpha-glucan branching enzyme IIB,... 376 e-104
sp|Q01401|GLGB_ORYSA 1,4-alpha-glucan branching enzyme, chl... 372 e-103
sp|P32775|GLGB_YEAST 1,4-alpha-glucan branching enzyme (Gly... 367 e-101
sp|Q8RF62|GLGB_FUSNN 1,4-alpha-glucan branching enzyme (Gly... 108 1e-23
sp|Q8CZE8|GLGB_OCEIH 1,4-alpha-glucan branching enzyme (Gly... 100 4e-21
>sp|Q04446|GLGB_HUMAN 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme)
(Brancher enzyme)
Length = 702
Score = 426 bits (1095), Expect = e-119
Identities = 198/272 (72%), Positives = 228/272 (83%)
Frame = +1
Query: 1 AHRLGLYVLLDVVHSHACKNTLDGLNQFDGTSSCFFHDNSRGEHTLWDSRLFNYTELEVL 180
AH +G+ VLLDVVHSHA KN+ DGLN FDGT SC+FH RG H LWDSRLF Y+ EVL
Sbjct: 276 AHSMGIIVLLDVVHSHASKNSADGLNMFDGTDSCYFHSGPRGTHDLWDSRLFAYSSWEVL 335
Query: 181 RFLLSNLRWWIEEYGFDGFRFDGVTSMLYHHHGLNANFSGTYDEYFGLGIDTESLTYLML 360
RFLLSN+RWW+EEY FDGFRFDGVTSMLYHHHG+ FSG Y EYFGL +D ++LTYLML
Sbjct: 336 RFLLSNIRWWLEEYRFDGFRFDGVTSMLYHHHGVGQGFSGDYSEYFGLQVDEDALTYLML 395
Query: 361 ANYMLKTKFPFVITICEEVSGMPTMCRPLSEGGIGFDYRLAMSIPDKWIELLKKCKDDDW 540
AN+++ T P ITI E+VSGMP +C P+S+GG GFDYRLAM+IPDKWI+LLK+ KD+DW
Sbjct: 396 ANHLVHTLCPDSITIAEDVSGMPALCSPISQGGGGFDYRLAMAIPDKWIQLLKEFKDEDW 455
Query: 541 NLSDLVFTLTNRRYKEANIAYAESHDQQLVGDKTLAFWLMDKEMYTHMSTLSEPSLVIDR 720
N+ D+V+TLTNRRY E IAYAESHDQ LVGDK+LAFWLMD EMYT+MS L+ + VIDR
Sbjct: 456 NMGDIVYTLTNRRYLEKCIAYAESHDQALVGDKSLAFWLMDAEMYTNMSVLTPFTPVIDR 515
Query: 721 GIALHKMIRLITNSLGGEGYLNFMGNEFGHPE 816
GI LHKMIRLIT+ LGGEGYLNFMGNEFGHPE
Sbjct: 516 GIQLHKMIRLITHGLGGEGYLNFMGNEFGHPE 547
>sp|Q9D6Y9|GLGB_MOUSE 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme)
(Brancher enzyme)
Length = 702
Score = 422 bits (1085), Expect = e-118
Identities = 196/272 (72%), Positives = 227/272 (83%)
Frame = +1
Query: 1 AHRLGLYVLLDVVHSHACKNTLDGLNQFDGTSSCFFHDNSRGEHTLWDSRLFNYTELEVL 180
AH +G+ VLLDVVHSHA KN+ DGLN FDGT SC+FH RG H LWDSRLF Y+ EVL
Sbjct: 276 AHSMGIVVLLDVVHSHASKNSEDGLNMFDGTDSCYFHSGPRGTHDLWDSRLFIYSSWEVL 335
Query: 181 RFLLSNLRWWIEEYGFDGFRFDGVTSMLYHHHGLNANFSGTYDEYFGLGIDTESLTYLML 360
RFLLSN+RWW+EEY FDGFRFDGVTSMLYHHHG+ FSG Y+EYFGL +D ++L YLML
Sbjct: 336 RFLLSNIRWWLEEYCFDGFRFDGVTSMLYHHHGMGQGFSGDYNEYFGLQVDEDALIYLML 395
Query: 361 ANYMLKTKFPFVITICEEVSGMPTMCRPLSEGGIGFDYRLAMSIPDKWIELLKKCKDDDW 540
AN++ T +P ITI E+VSGMP +C P S+GG GFDYRLAM+IPDKWI+LLK+ KD+DW
Sbjct: 396 ANHLAHTLYPDSITIAEDVSGMPALCSPTSQGGGGFDYRLAMAIPDKWIQLLKEFKDEDW 455
Query: 541 NLSDLVFTLTNRRYKEANIAYAESHDQQLVGDKTLAFWLMDKEMYTHMSTLSEPSLVIDR 720
N+ ++V+TLTNRRY E +AYAESHDQ LVGDKTLAFWLMD EMYT+MS L+ + VIDR
Sbjct: 456 NMGNIVYTLTNRRYLEKCVAYAESHDQALVGDKTLAFWLMDAEMYTNMSVLAPFTPVIDR 515
Query: 721 GIALHKMIRLITNSLGGEGYLNFMGNEFGHPE 816
GI LHKMIRLIT+ LGGEGYLNFMGNEFGHPE
Sbjct: 516 GIQLHKMIRLITHGLGGEGYLNFMGNEFGHPE 547
>sp|Q5KP87|GLGB_CRYNE 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme)
Length = 682
Score = 394 bits (1012), Expect = e-109
Identities = 182/272 (66%), Positives = 218/272 (80%)
Frame = +1
Query: 1 AHRLGLYVLLDVVHSHACKNTLDGLNQFDGTSSCFFHDNSRGEHTLWDSRLFNYTELEVL 180
AH LGL VLLDVVHSHA KN LDG+N +DG+ +FH+ RG H WDSRLFNY + EVL
Sbjct: 261 AHELGLTVLLDVVHSHASKNILDGINMYDGSDHLYFHEGGRGRHDQWDSRLFNYGQHEVL 320
Query: 181 RFLLSNLRWWIEEYGFDGFRFDGVTSMLYHHHGLNANFSGTYDEYFGLGIDTESLTYLML 360
RFLLSNLR+W++ Y FDGFRFDGVTSM+Y HHG+ + FSG Y EYFG +D E++ YLML
Sbjct: 321 RFLLSNLRFWMDIYMFDGFRFDGVTSMMYKHHGIGSGFSGGYHEYFGDSVDLEAMVYLML 380
Query: 361 ANYMLKTKFPFVITICEEVSGMPTMCRPLSEGGIGFDYRLAMSIPDKWIELLKKCKDDDW 540
AN ML +P V+TI E+VSGMPT+CRP++EGG+GFDYRL+M+IPD WI+LLK+ DD W
Sbjct: 381 ANAMLHETYPHVVTIAEDVSGMPTLCRPVAEGGVGFDYRLSMAIPDMWIKLLKEYTDDQW 440
Query: 541 NLSDLVFTLTNRRYKEANIAYAESHDQQLVGDKTLAFWLMDKEMYTHMSTLSEPSLVIDR 720
+ +V LTNRR+ E ++AYAESHDQ LVGDKTLAFWLMDKEMY MS LS + +IDR
Sbjct: 441 EMGQIVHNLTNRRHLEKSVAYAESHDQALVGDKTLAFWLMDKEMYDFMSDLSPLTPIIDR 500
Query: 721 GIALHKMIRLITNSLGGEGYLNFMGNEFGHPE 816
G+ALHKMIR I ++LGGE YLNF GNEFGHPE
Sbjct: 501 GLALHKMIRFIVHTLGGEAYLNFEGNEFGHPE 532
>sp|Q8NKE1|GLGB_GLOIN 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme)
Length = 683
Score = 390 bits (1001), Expect = e-108
Identities = 180/272 (66%), Positives = 217/272 (79%)
Frame = +1
Query: 1 AHRLGLYVLLDVVHSHACKNTLDGLNQFDGTSSCFFHDNSRGEHTLWDSRLFNYTELEVL 180
AH +GLYVLLDVVHSHACKN LDGLN FDG+ C+FH+ +G H LWDSRLFNY EVL
Sbjct: 261 AHGMGLYVLLDVVHSHACKNVLDGLNMFDGSDHCYFHEGGKGRHDLWDSRLFNYGHWEVL 320
Query: 181 RFLLSNLRWWIEEYGFDGFRFDGVTSMLYHHHGLNANFSGTYDEYFGLGIDTESLTYLML 360
RFLLSNLR+++EEY FDGFRFDGVTSM+YHHHG+ FSG Y EYFG +D + YLML
Sbjct: 321 RFLLSNLRFFMEEYRFDGFRFDGVTSMMYHHHGIGTGFSGGYHEYFGDTVDEGGVVYLML 380
Query: 361 ANYMLKTKFPFVITICEEVSGMPTMCRPLSEGGIGFDYRLAMSIPDKWIELLKKCKDDDW 540
AN ML +P +IT+ E+VSGMP +C P+ EGGIGFDYRLAM+IPD WI+LLK+ +DDDW
Sbjct: 381 ANDMLHKLYPRIITVSEDVSGMPGLCLPVEEGGIGFDYRLAMAIPDMWIKLLKEQRDDDW 440
Query: 541 NLSDLVFTLTNRRYKEANIAYAESHDQQLVGDKTLAFWLMDKEMYTHMSTLSEPSLVIDR 720
++ ++ +TLTNRR+ E IAYAESHDQ LVGDK + + MYTHMS ++ + +IDR
Sbjct: 441 DMGNICWTLTNRRHMEKTIAYAESHDQALVGDKNTCLLVNGQGMYTHMSDMTPLTPIIDR 500
Query: 721 GIALHKMIRLITNSLGGEGYLNFMGNEFGHPE 816
G+ALHKMIRL+T+ LGGEGYLNF GNEFGHPE
Sbjct: 501 GLALHKMIRLLTHGLGGEGYLNFEGNEFGHPE 532
>sp|P30924|GLGB_SOLTU 1,4-alpha-glucan branching enzyme (Starch branching enzyme)
(Q-enzyme)
Length = 861
Score = 381 bits (979), Expect = e-105
Identities = 181/275 (65%), Positives = 212/275 (77%), Gaps = 3/275 (1%)
Frame = +1
Query: 1 AHRLGLYVLLDVVHSHACKNTLDGLNQFD---GTSSCFFHDNSRGEHTLWDSRLFNYTEL 171
AH LGL VL+DVVHSHA N DGLN FD G+ +FH RG H LWDSRLFNY
Sbjct: 345 AHSLGLQVLVDVVHSHASNNVTDGLNGFDIGQGSQESYFHAGERGYHKLWDSRLFNYANW 404
Query: 172 EVLRFLLSNLRWWIEEYGFDGFRFDGVTSMLYHHHGLNANFSGTYDEYFGLGIDTESLTY 351
EVLRFLLSNLRWW+EEY FDGFRFDG+TSMLY HHG+N F+G Y+EYF D +++ Y
Sbjct: 405 EVLRFLLSNLRWWLEEYNFDGFRFDGITSMLYVHHGINMGFTGNYNEYFSEATDVDAVVY 464
Query: 352 LMLANYMLKTKFPFVITICEEVSGMPTMCRPLSEGGIGFDYRLAMSIPDKWIELLKKCKD 531
LMLAN ++ FP I E+VSGMP + RP+SEGGIGFDYRLAM+IPDKWI+ LK D
Sbjct: 465 LMLANNLIHKIFPDATVIAEDVSGMPGLGRPVSEGGIGFDYRLAMAIPDKWIDYLKNKND 524
Query: 532 DDWNLSDLVFTLTNRRYKEANIAYAESHDQQLVGDKTLAFWLMDKEMYTHMSTLSEPSLV 711
+DW++ ++ +LTNRRY E IAYAESHDQ +VGDKT+AF LMDKEMY+ MS L++ S V
Sbjct: 525 EDWSMKEVTSSLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYSGMSCLTDASPV 584
Query: 712 IDRGIALHKMIRLITNSLGGEGYLNFMGNEFGHPE 816
+DRGIALHKMI T +LGGEGYLNFMGNEFGHPE
Sbjct: 585 VDRGIALHKMIHFFTMALGGEGYLNFMGNEFGHPE 619
>sp|Q08047|GLGB_MAIZE 1,4-alpha-glucan branching enzyme IIB, chloroplast precursor (Starch
branching enzyme IIB) (Q-enzyme)
Length = 799
Score = 376 bits (966), Expect = e-104
Identities = 175/272 (64%), Positives = 209/272 (76%)
Frame = +1
Query: 1 AHRLGLYVLLDVVHSHACKNTLDGLNQFDGTSSCFFHDNSRGEHTLWDSRLFNYTELEVL 180
AH LGL VL+DVVHSHA NTLDGLN FDGT + +FH RG H +WDSRLFNY EVL
Sbjct: 366 AHELGLLVLMDVVHSHASSNTLDGLNGFDGTDTHYFHSGPRGHHWMWDSRLFNYGNWEVL 425
Query: 181 RFLLSNLRWWIEEYGFDGFRFDGVTSMLYHHHGLNANFSGTYDEYFGLGIDTESLTYLML 360
RFLLSN RWW+EEY FDGFRFDGVTSM+Y HHGL F+G ++EYFG D +++ YLML
Sbjct: 426 RFLLSNARWWLEEYKFDGFRFDGVTSMMYTHHGLQVTFTGNFNEYFGFATDVDAVVYLML 485
Query: 361 ANYMLKTKFPFVITICEEVSGMPTMCRPLSEGGIGFDYRLAMSIPDKWIELLKKCKDDDW 540
N ++ +P +TI E+VSGMPT P+ +GG+GFDYR+ M++ DKWI+LLK+ D+ W
Sbjct: 486 VNDLIHGLYPEAVTIGEDVSGMPTFALPVHDGGVGFDYRMHMAVADKWIDLLKQ-SDETW 544
Query: 541 NLSDLVFTLTNRRYKEANIAYAESHDQQLVGDKTLAFWLMDKEMYTHMSTLSEPSLVIDR 720
+ D+V TLTNRR+ E + YAESHDQ LVGDKT+AFWLMDK+MY M+ + IDR
Sbjct: 545 KMGDIVHTLTNRRWLEKCVTYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPTIDR 604
Query: 721 GIALHKMIRLITNSLGGEGYLNFMGNEFGHPE 816
GIALHKMIRLIT LGGEGYLNFMGNEFGHPE
Sbjct: 605 GIALHKMIRLITMGLGGEGYLNFMGNEFGHPE 636
>sp|Q01401|GLGB_ORYSA 1,4-alpha-glucan branching enzyme, chloroplast precursor (Starch
branching enzyme) (Q-enzyme)
Length = 820
Score = 372 bits (955), Expect = e-103
Identities = 175/275 (63%), Positives = 210/275 (76%), Gaps = 3/275 (1%)
Frame = +1
Query: 1 AHRLGLYVLLDVVHSHACKNTLDGLNQFD---GTSSCFFHDNSRGEHTLWDSRLFNYTEL 171
AH LGL VL+DVVHSHA N DGLN +D T +FH RG H LWDSRLFNY
Sbjct: 325 AHSLGLRVLMDVVHSHASNNVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDSRLFNYANW 384
Query: 172 EVLRFLLSNLRWWIEEYGFDGFRFDGVTSMLYHHHGLNANFSGTYDEYFGLGIDTESLTY 351
EVLRFLLSNLR+W++E+ FDGFRFDGVTSMLYHHHG+N F+G Y EYF L D +++ Y
Sbjct: 385 EVLRFLLSNLRYWMDEFMFDGFRFDGVTSMLYHHHGINKGFTGNYKEYFSLDTDVDAIVY 444
Query: 352 LMLANYMLKTKFPFVITICEEVSGMPTMCRPLSEGGIGFDYRLAMSIPDKWIELLKKCKD 531
+MLAN+++ P + E+VSGMP +CRP+ EGG+GFD+RLAM+IPD+WI+ LK +D
Sbjct: 445 MMLANHLMHKLLPEATIVAEDVSGMPVLCRPVDEGGVGFDFRLAMAIPDRWIDYLKNKED 504
Query: 532 DDWNLSDLVFTLTNRRYKEANIAYAESHDQQLVGDKTLAFWLMDKEMYTHMSTLSEPSLV 711
W++S++V TLTNRRY E IAYAESHDQ +VGDKT+AF LMDKEMYT MS L S
Sbjct: 505 RKWSMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPT 564
Query: 712 IDRGIALHKMIRLITNSLGGEGYLNFMGNEFGHPE 816
I+RGIAL KMI IT +LGG+GYLNFMGNEFGHPE
Sbjct: 565 INRGIALQKMIHFITMALGGDGYLNFMGNEFGHPE 599
>sp|P32775|GLGB_YEAST 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme)
Length = 704
Score = 367 bits (941), Expect = e-101
Identities = 181/280 (64%), Positives = 215/280 (76%), Gaps = 8/280 (2%)
Frame = +1
Query: 1 AHRLGLYVLLDVVHSHACKNTLDGLNQFDGTSSCFFHDNS--RGEHTLWDSRLFNYTELE 174
AH +G+ VLLDVVHSHA KN DGLN FDG+ +FH S RGEH LWDSRLFNY + E
Sbjct: 273 AHSMGILVLLDVVHSHASKNVEDGLNMFDGSDHQYFHSISSGRGEHPLWDSRLFNYGKFE 332
Query: 175 VLRFLLSNLRWWIEEYGFDGFRFDGVTSMLYHHHGLNA--NFSGTYDEYFGLG---IDTE 339
V RFLL+NL ++++ Y FDGFRFDGVTSMLY HHG+ A +FSG Y+EY +D E
Sbjct: 333 VQRFLLANLAFYVDVYQFDGFRFDGVTSMLYVHHGVGAGGSFSGDYNEYLSRDRSFVDHE 392
Query: 340 SLTYLMLANYMLKTKFP-FVITICEEVSGMPTMCRPLSEGGIGFDYRLAMSIPDKWIELL 516
+L YLMLAN ++ P +T+ E+VSG PT+C P S GG GFDYRLAM++PD WI+L+
Sbjct: 393 ALAYLMLANDLVHEMLPNLAVTVAEDVSGYPTLCLPRSIGGTGFDYRLAMALPDMWIKLI 452
Query: 517 KKCKDDDWNLSDLVFTLTNRRYKEANIAYAESHDQQLVGDKTLAFWLMDKEMYTHMSTLS 696
K+ KDD+W + +V+TLTNRRY E +AY ESHDQ LVGDKTLAFWLMD MYT M+ L
Sbjct: 453 KEKKDDEWEMGSIVYTLTNRRYGEKVVAYCESHDQALVGDKTLAFWLMDAAMYTDMTVLK 512
Query: 697 EPSLVIDRGIALHKMIRLITNSLGGEGYLNFMGNEFGHPE 816
EPS+VIDRGIALHKMIRLIT+SLGGE YLNF GNEFGHPE
Sbjct: 513 EPSIVIDRGIALHKMIRLITHSLGGEAYLNFEGNEFGHPE 552
>sp|Q8RF62|GLGB_FUSNN 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme) (BE)
(1,4-alpha-D-glucan:1,4-alpha-D-glucan
6-glucosyl-transferase)
Length = 611
Score = 108 bits (271), Expect = 1e-23
Identities = 87/279 (31%), Positives = 131/279 (46%), Gaps = 12/279 (4%)
Frame = +1
Query: 4 HRLGLYVLLDVVHSHACKNTLDGLNQFDGTSSCFFHDNSRGEHTLWDSRLFNYTELEVLR 183
H+ L V+LD V H CK++ GL +FDG++ + D S GE+ W S FN + EV
Sbjct: 224 HKNNLGVILDWVPGHFCKDS-HGLYRFDGSACYEYEDPSLGENE-WGSANFNVSRNEVRS 281
Query: 184 FLLSNLRWWIEEYGFDGFRFDGVTSMLYHHHGLNANFSGTYDEYFGLGIDTESLTYLMLA 363
FLLSNL +WI+E+ DG R D V++MLY+ GL+ N S+ +L
Sbjct: 282 FLLSNLYFWIKEFHIDGIRMDAVSNMLYYKDGLSEN--------------KHSVEFLQYL 327
Query: 364 NYMLKTKFPFVITICEEVSGMPTMCRPLSEGGIGFDYRLAMSIPDKWIELLKKCKDDDWN 543
N L ++P V+ I E+ S P + + ++GG+GFD++ WN
Sbjct: 328 NQSLHEEYPDVMLIAEDSSAWPLVTKYQADGGLGFDFK--------------------WN 367
Query: 544 LSDLVFTLTNRRYKEANIAYAESHDQQLVGDKTLAFWLMDKEMYTHMSTLSEPSLVIDRG 723
+ + TL +Y E + + +SH G T +F E + + LS +V +
Sbjct: 368 MGWMNDTL---KYMEQDPFFRKSHH----GKLTFSFMYAFSENF--ILPLSHDEIVHGKN 418
Query: 724 IALHKM-----------IRLITNSLGGEG-YLNFMGNEF 804
L+KM L + + G LNFMGNEF
Sbjct: 419 SILNKMPGYYEDKLAHVKNLYSYQMAHPGKKLNFMGNEF 457
>sp|Q8CZE8|GLGB_OCEIH 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme) (BE)
(1,4-alpha-D-glucan:1,4-alpha-D-glucan
6-glucosyl-transferase)
Length = 637
Score = 100 bits (250), Expect = 4e-21
Identities = 67/215 (31%), Positives = 109/215 (50%), Gaps = 1/215 (0%)
Frame = +1
Query: 4 HRLGLYVLLDVVHSHACKNTLDGLNQFDGTSSCFFHDNSRGEHTLWDSRLFNYTELEVLR 183
H++G V+LD V H CK+ GL QFDG + D + E W + F+Y EV
Sbjct: 230 HQIG--VILDWVPGHFCKDDF-GLRQFDGAPLYEYRDPKKSEKKSWGTLAFDYGRPEVQS 286
Query: 184 FLLSNLRWWIEEYGFDGFRFDGVTSMLYHHHGLNANFSGTYDEYFGLGIDTESLTYLMLA 363
FL+SN +W++E+ DG R D V SMLY + Y+ Y G + E+ +L
Sbjct: 287 FLISNAIYWLKEFHIDGLRVDAVASMLYLNFDRYDEEEKIYNTYGG-EENLEAFAFLRKL 345
Query: 364 NYMLKTKFPFVITICEEVSGMPTMCRPLSEGGIGFDYRLAMSIPDKWIELL-KKCKDDDW 540
N ++ + P + + E+ S +P + P+++GG+GF+Y+ M + + + K+ W
Sbjct: 346 NKVVFSYIPGALMMAEDSSDLPLVTAPVNKGGLGFNYKWNMGWMNDLLSFMEKESIHRKW 405
Query: 541 NLSDLVFTLTNRRYKEANIAYAESHDQQLVGDKTL 645
+ + L F+ Y E N SHD+ + G K+L
Sbjct: 406 HHNRLTFSFM-YTYSE-NYLLPLSHDEVVHGKKSL 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,171,995
Number of Sequences: 369166
Number of extensions: 2102644
Number of successful extensions: 5278
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5179
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7859674995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)