Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_B08
(580 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8ZA97|STHA_YERPE Soluble pyridine nucleotide transhydro... 36 0.060
sp|P27306|STHA_ECOLI Soluble pyridine nucleotide transhydro... 34 0.30
sp|Q8FB93|STHA_ECOL6 Soluble pyridine nucleotide transhydro... 34 0.30
sp|Q83MI1|STHA_SHIFL Soluble pyridine nucleotide transhydro... 34 0.30
sp|Q8X727|STHA_ECO57 Soluble pyridine nucleotide transhydro... 34 0.30
sp|P66008|STHA_SALTY Soluble pyridine nucleotide transhydro... 33 0.39
sp|Q7MBG9|STHA_PHOLL Soluble pyridine nucleotide transhydro... 33 0.67
sp|Q62786|FPRP_RAT Prostaglandin F2 receptor negative regul... 32 0.87
sp|Q9WV91|FPRP_MOUSE Prostaglandin F2 receptor negative reg... 32 0.87
sp|O74270|ORC1_CANAL Origin recognition complex subunit 1 31 2.5
>sp|Q8ZA97|STHA_YERPE Soluble pyridine nucleotide transhydrogenase (STH) (NAD(P)(+)
transhydrogenase [B-specific])
Length = 466
Score = 36.2 bits (82), Expect = 0.060
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +2
Query: 191 QHFRCKVKLTIGSGETDRNWSIGLVQACDRMYLENRYGDIGS--SYWEFHPLKSGRHTMV 364
QHF + IGSG ++GLV+ R+ + RY ++G ++W P K+ RH +
Sbjct: 3 QHFHFDA-IVIGSGPGGEGAAMGLVKQGARVAVIERYNNVGGGCTHWGTIPSKALRHAVS 61
Query: 365 NDSDGRQYPFYS 400
+ Q P YS
Sbjct: 62 RIIEFNQNPLYS 73
>sp|P27306|STHA_ECOLI Soluble pyridine nucleotide transhydrogenase (STH) (NAD(P)(+)
transhydrogenase [B-specific])
Length = 466
Score = 33.9 bits (76), Expect = 0.30
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 215 LTIGSGETDRNWSIGLVQACDRMYLENRYGDIGS--SYWEFHPLKSGRHTMVNDSDGRQY 388
+ IGSG ++GLV+ R+ + RY ++G ++W P K+ RH + + Q
Sbjct: 10 IVIGSGPGGEGAAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQN 69
Query: 389 PFYS 400
P YS
Sbjct: 70 PLYS 73
>sp|Q8FB93|STHA_ECOL6 Soluble pyridine nucleotide transhydrogenase (STH) (NAD(P)(+)
transhydrogenase [B-specific])
Length = 466
Score = 33.9 bits (76), Expect = 0.30
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 215 LTIGSGETDRNWSIGLVQACDRMYLENRYGDIGS--SYWEFHPLKSGRHTMVNDSDGRQY 388
+ IGSG ++GLV+ R+ + RY ++G ++W P K+ RH + + Q
Sbjct: 10 IVIGSGPGGEGAAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQN 69
Query: 389 PFYS 400
P YS
Sbjct: 70 PLYS 73
>sp|Q83MI1|STHA_SHIFL Soluble pyridine nucleotide transhydrogenase (STH) (NAD(P)(+)
transhydrogenase [B-specific])
Length = 466
Score = 33.9 bits (76), Expect = 0.30
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 215 LTIGSGETDRNWSIGLVQACDRMYLENRYGDIGS--SYWEFHPLKSGRHTMVNDSDGRQY 388
+ IGSG ++GLV+ R+ + RY ++G ++W P K+ RH + + Q
Sbjct: 10 IVIGSGPGGEGAAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQN 69
Query: 389 PFYS 400
P YS
Sbjct: 70 PLYS 73
>sp|Q8X727|STHA_ECO57 Soluble pyridine nucleotide transhydrogenase (STH) (NAD(P)(+)
transhydrogenase [B-specific])
Length = 466
Score = 33.9 bits (76), Expect = 0.30
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 215 LTIGSGETDRNWSIGLVQACDRMYLENRYGDIGS--SYWEFHPLKSGRHTMVNDSDGRQY 388
+ IGSG ++GLV+ R+ + RY ++G ++W P K+ RH + + Q
Sbjct: 10 IVIGSGPGGEGAAMGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQN 69
Query: 389 PFYS 400
P YS
Sbjct: 70 PLYS 73
>sp|P66008|STHA_SALTY Soluble pyridine nucleotide transhydrogenase (STH) (NAD(P)(+)
transhydrogenase [B-specific])
sp|P66009|STHA_SALTI Soluble pyridine nucleotide transhydrogenase (STH) (NAD(P)(+)
transhydrogenase [B-specific])
Length = 466
Score = 33.5 bits (75), Expect = 0.39
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 215 LTIGSGETDRNWSIGLVQACDRMYLENRYGDIGS--SYWEFHPLKSGRHTMVNDSDGRQY 388
+ IGSG ++GLV+ R+ + RY ++G ++W P K+ RH + + Q
Sbjct: 10 VVIGSGPGGEGAAMGLVKQGARVAVIERYHNVGGGCTHWGTIPSKALRHAVSRIIEFNQN 69
Query: 389 PFYS 400
P YS
Sbjct: 70 PLYS 73
>sp|Q7MBG9|STHA_PHOLL Soluble pyridine nucleotide transhydrogenase (STH) (NAD(P)(+)
transhydrogenase [B-specific])
Length = 465
Score = 32.7 bits (73), Expect = 0.67
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 215 LTIGSGETDRNWSIGLVQACDRMYLENRYGDIGS--SYWEFHPLKSGRHTMVNDSDGRQY 388
+ IGSG ++GLV+ + + RY ++G ++W P K+ RH + + Q
Sbjct: 9 IVIGSGPGGEGAAMGLVKQGKSVAVIERYNNVGGGCTHWGTIPSKALRHAVSRIIEFNQN 68
Query: 389 PFYS 400
P YS
Sbjct: 69 PLYS 72
>sp|Q62786|FPRP_RAT Prostaglandin F2 receptor negative regulator precursor
(Prostaglandin F2-alpha receptor regulatory protein)
(Prostaglandin F2-alpha receptor associated protein)
Length = 879
Score = 32.3 bits (72), Expect = 0.87
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 389 PFYSLTSSKFELKKGIVHESVVSLHYEDHFYPTVA*ELPYCGGTKLTDVI 538
P ++ + ++EL +G VH S+++L +E F+P E Y G D +
Sbjct: 176 PLHTHLALRWELHRGPVHRSILALSHEGRFHPGPGYEQRYHSGDVRLDTV 225
>sp|Q9WV91|FPRP_MOUSE Prostaglandin F2 receptor negative regulator precursor
(Prostaglandin F2-alpha receptor regulatory protein)
(Prostaglandin F2-alpha receptor associated protein)
Length = 879
Score = 32.3 bits (72), Expect = 0.87
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 389 PFYSLTSSKFELKKGIVHESVVSLHYEDHFYPTVA*ELPYCGGTKLTDVI 538
P ++ + ++EL +G VH S+++L +E F+P E Y G D +
Sbjct: 176 PLHTHLALRWELHRGPVHRSILALSHEGRFHPGPGYEQRYHSGDVRLDTV 225
>sp|O74270|ORC1_CANAL Origin recognition complex subunit 1
Length = 805
Score = 30.8 bits (68), Expect = 2.5
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +2
Query: 29 IIGILKNLFTKAQHEE*MTKFGLNNIQVNSVRVYYDEKTSTKTNETSNLLQYESQHFRCK 208
II ++N F A H E + ++N V Y +KT T TNET +L F+
Sbjct: 705 IIDEMRNSFAMATHSEEQ-----GSDELNMQDVLYSDKTFTATNETVPILNLRIHFFKQI 759
Query: 209 VKLTIGSG 232
V + +G
Sbjct: 760 VTSLVEAG 767
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,649,127
Number of Sequences: 369166
Number of extensions: 1261982
Number of successful extensions: 2689
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2682
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4259329035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)