Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_B04
(652 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P92176|ACT2_LUMTE Actin-2 401 e-112
sp|Q26065|ACT_PLAMG Actin, adductor muscle 398 e-111
sp|P53458|ACT5_DIPDE Actin-5 398 e-111
sp|P10984|ACT2_CAEEL Actin-2 397 e-110
sp|P91754|ACT_LUMRU Actin 397 e-110
sp|P92182|ACT1_LUMTE Actin-1 397 e-110
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 397 e-110
sp|P53464|ACTM_HELTB Actin, cytoskeletal (M) 397 e-110
sp|P30163|ACT2_ONCVO Actin-2 397 e-110
sp|P30162|ACT1_ONCVO Actin-1 397 e-110
>sp|P92176|ACT2_LUMTE Actin-2
Length = 376
Score = 401 bits (1030), Expect = e-112
Identities = 199/214 (92%), Positives = 203/214 (94%), Gaps = 1/214 (0%)
Frame = +1
Query: 1 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 180
KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 19 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 78
Query: 181 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 360
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQ
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ 138
Query: 361 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 540
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 198
Query: 541 YSFTTTAEENRER-YQEKLCYIALDLMQNENSIS 639
YSFTTTAE R +EKLCY+ALD Q N+ S
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFEQEMNTAS 232
>sp|Q26065|ACT_PLAMG Actin, adductor muscle
Length = 376
Score = 398 bits (1023), Expect = e-111
Identities = 199/210 (94%), Positives = 202/210 (96%), Gaps = 1/210 (0%)
Frame = +1
Query: 1 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 180
KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 19 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 78
Query: 181 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 360
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 138
Query: 361 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 540
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 198
Query: 541 YSFTTTAEENRER-YQEKLCYIALDLMQNE 627
YSFTTTAE R +EKLCY+ALD +NE
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALD-FENE 227
>sp|P53458|ACT5_DIPDE Actin-5
Length = 371
Score = 398 bits (1022), Expect = e-111
Identities = 197/208 (94%), Positives = 200/208 (96%), Gaps = 1/208 (0%)
Frame = +1
Query: 1 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 180
KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 14 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 73
Query: 181 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 360
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQ
Sbjct: 74 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ 133
Query: 361 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 540
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 134 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 193
Query: 541 YSFTTTAEENRER-YQEKLCYIALDLMQ 621
YSFTTTAE R +EKLCY+ALD Q
Sbjct: 194 YSFTTTAEREIVRDIKEKLCYVALDFEQ 221
>sp|P10984|ACT2_CAEEL Actin-2
Length = 376
Score = 397 bits (1021), Expect = e-110
Identities = 197/208 (94%), Positives = 199/208 (95%), Gaps = 1/208 (0%)
Frame = +1
Query: 1 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 180
KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 19 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 78
Query: 181 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 360
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQ
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 138
Query: 361 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 540
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 198
Query: 541 YSFTTTAEENRER-YQEKLCYIALDLMQ 621
YSFTTTAE R +EKLCY+ALD Q
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFEQ 226
>sp|P91754|ACT_LUMRU Actin
Length = 372
Score = 397 bits (1021), Expect = e-110
Identities = 197/208 (94%), Positives = 200/208 (96%), Gaps = 1/208 (0%)
Frame = +1
Query: 1 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 180
KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 15 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 74
Query: 181 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 360
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQ
Sbjct: 75 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ 134
Query: 361 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 540
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 135 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 194
Query: 541 YSFTTTAEENRER-YQEKLCYIALDLMQ 621
YSFTTTAE R +EKLCY+ALD Q
Sbjct: 195 YSFTTTAEREIVRDIKEKLCYVALDFDQ 222
>sp|P92182|ACT1_LUMTE Actin-1
Length = 376
Score = 397 bits (1021), Expect = e-110
Identities = 197/208 (94%), Positives = 200/208 (96%), Gaps = 1/208 (0%)
Frame = +1
Query: 1 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 180
KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 19 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 78
Query: 181 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 360
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQ
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ 138
Query: 361 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 540
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 198
Query: 541 YSFTTTAEENRER-YQEKLCYIALDLMQ 621
YSFTTTAE R +EKLCY+ALD Q
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFDQ 226
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 397 bits (1021), Expect = e-110
Identities = 197/214 (92%), Positives = 201/214 (93%), Gaps = 1/214 (0%)
Frame = +1
Query: 1 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 180
KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 19 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 78
Query: 181 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 360
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQ
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 138
Query: 361 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 540
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERG 198
Query: 541 YSFTTTAEENRER-YQEKLCYIALDLMQNENSIS 639
YSFTTTAE R +EKLCY+ALD Q + S
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAS 232
>sp|P53464|ACTM_HELTB Actin, cytoskeletal (M)
Length = 376
Score = 397 bits (1021), Expect = e-110
Identities = 198/208 (95%), Positives = 199/208 (95%), Gaps = 1/208 (0%)
Frame = +1
Query: 1 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 180
KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 19 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 78
Query: 181 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 360
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 138
Query: 361 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 540
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 198
Query: 541 YSFTTTAEENRER-YQEKLCYIALDLMQ 621
YSFTTTAE R +EKLCY ALD Q
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYTALDFEQ 226
>sp|P30163|ACT2_ONCVO Actin-2
Length = 376
Score = 397 bits (1021), Expect = e-110
Identities = 197/208 (94%), Positives = 199/208 (95%), Gaps = 1/208 (0%)
Frame = +1
Query: 1 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 180
KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 19 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 78
Query: 181 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 360
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQ
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 138
Query: 361 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 540
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 198
Query: 541 YSFTTTAEENRER-YQEKLCYIALDLMQ 621
YSFTTTAE R +EKLCY+ALD Q
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFEQ 226
>sp|P30162|ACT1_ONCVO Actin-1
Length = 376
Score = 397 bits (1021), Expect = e-110
Identities = 197/208 (94%), Positives = 199/208 (95%), Gaps = 1/208 (0%)
Frame = +1
Query: 1 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 180
KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 19 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 78
Query: 181 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 360
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQ
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 138
Query: 361 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 540
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 198
Query: 541 YSFTTTAEENRER-YQEKLCYIALDLMQ 621
YSFTTTAE R +EKLCY+ALD Q
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFEQ 226
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,936,430
Number of Sequences: 369166
Number of extensions: 1555055
Number of successful extensions: 5747
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5422
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5365037700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)