Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_A18
(774 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q94546|ATU_DROME Another transcription unit protein 136 7e-32
sp|P38439|LEO1_YEAST Protein LEO1 63 1e-09
sp|P56716|RP1_MOUSE Oxygen-regulated protein 1 (Retinitis p... 34 0.51
sp|Q92WB5|UXUA_RHIME Mannonate dehydratase (D-mannonate hyd... 31 4.3
sp|Q8NHP6|MSPD2_HUMAN Motile sperm domain containing protein 2 30 7.3
sp|Q87Q70|SYT_VIBPA Threonyl-tRNA synthetase (Threonine--tR... 30 7.3
sp|Q9SI20|EF1B2_ARATH Probable elongation factor 1-beta 2 (... 30 9.5
sp|P40943|XYN1_BACST Endo-1,4-beta-xylanase precursor (Xyla... 30 9.5
sp|P48006|EF1B1_ARATH Elongation factor 1-beta 1 (EF-1-beta 1) 30 9.5
sp|P04595|VIF_HV2RO Virion infectivity factor (Vif) (SOR pr... 30 9.5
>sp|Q94546|ATU_DROME Another transcription unit protein
Length = 725
Score = 136 bits (342), Expect = 7e-32
Identities = 66/108 (61%), Positives = 79/108 (73%)
Frame = +2
Query: 380 IEVDFPVIKADLGEEMHLVKLPNFLSVETRPFDPMYYEDEMDESEVQDEEGKTRLKLKVE 559
I+V+ P I ADLG+E H +KLPNFLSV T PFDP YEDE+DE E DEEG+ R+KLKV
Sbjct: 380 IDVEIPRISADLGKEQHFIKLPNFLSVVTHPFDPETYEDEIDEEETMDEEGRQRIKLKVS 439
Query: 560 NTIRWRIAKDSEGQPILDENDQPKRESNARMIRWSDGSLSLHLGREIF 703
NTIRWR +++G + RESNAR +RWSDGS+SLHLG EIF
Sbjct: 440 NTIRWREYMNNKGDMV--------RESNARFVRWSDGSMSLHLGNEIF 479
Score = 37.4 bits (85), Expect = 0.046
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 690 GARYFDVHTTDISADHNHLFVREGSGLQ 773
G FD + + DHNHLFVR+G+GLQ
Sbjct: 475 GNEIFDAYRQPLLGDHNHLFVRQGTGLQ 502
>sp|P38439|LEO1_YEAST Protein LEO1
Length = 464
Score = 62.8 bits (151), Expect = 1e-09
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Frame = +2
Query: 422 EMHLVKLPNFLSVETRPFDPMYYEDEMDE--SEVQDEEGKTRLKLKVENTIRWRIAKDSE 595
E+ ++PNFL+++ PFDP +E +++E S E + +L ENT+RWR ++D +
Sbjct: 167 EIFYARIPNFLTIDPIPFDPPSFEAKVNERASNSASREDQLDDRLIDENTVRWRYSRDKD 226
Query: 596 GQPILDENDQPKRESNARMIRWSDGSLSLHLGRE 697
+ESN ++++WSDG+ SL +G E
Sbjct: 227 QHVF--------KESNTQIVQWSDGTYSLKVGEE 252
>sp|P56716|RP1_MOUSE Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein
homolog)
Length = 2095
Score = 33.9 bits (76), Expect = 0.51
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Frame = +2
Query: 446 NFLSVETRPFDPMYY---EDEMDESEVQDEEG------KTRLKLKVENTIRWRIAKDSEG 598
N+L++ET + ED++++S V +++G K R K+K E T++W + G
Sbjct: 299 NYLALETHESQSLSTYPSEDDVEKSIVFNQDGTMTVVMKVRFKIKEEETVKWTTTVNRAG 358
Query: 599 QPILDENDQPKRESN 643
L ND+ ++S+
Sbjct: 359 ---LSNNDEKNKKSS 370
>sp|Q92WB5|UXUA_RHIME Mannonate dehydratase (D-mannonate hydrolase)
Length = 402
Score = 30.8 bits (68), Expect = 4.3
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Frame = +2
Query: 365 GDDGAIEV-DFPVIKADLGEEMHLVKLPNFLSVETRPFDPMYYEDEMDE---------SE 514
G GA+ D P + +H V L N L E R +YEDE E +E
Sbjct: 273 GSLGALAANDLPAMTRQFASRIHFVHLRNVLREEVRT-PCSFYEDEHLEGDTDMVAVIAE 331
Query: 515 VQDEEGKTRLKLKVENTIRWRIAKDSEGQPILDE 616
+ EE + R +V++ I R GQ ILD+
Sbjct: 332 LLQEEQRRRAAGRVDHQIPMR---PDHGQEILDD 362
>sp|Q8NHP6|MSPD2_HUMAN Motile sperm domain containing protein 2
Length = 518
Score = 30.0 bits (66), Expect = 7.3
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +2
Query: 422 EMHLVKLPNFLSVETRPFDPMYYEDEMDESEVQDEEGKTRLKLKVENTIRWRIAKDSEGQ 601
E H +S R F+ Y D+ D+ + +D E + VE+ + WR E
Sbjct: 3 ENHAQNKAKLISETRRRFEAEYVTDKSDKYDARDVERLQQDDNWVESYLSWRHNIVDETL 62
Query: 602 PILDENDQPKRE 637
+LDE+ Q ++E
Sbjct: 63 KMLDESFQWRKE 74
>sp|Q87Q70|SYT_VIBPA Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
Length = 642
Score = 30.0 bits (66), Expect = 7.3
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 16/61 (26%)
Frame = +2
Query: 485 YYEDEMDESEVQDEEGKTRLKLK---------VENTIRWRIAKD---SEGQP----ILDE 616
YY+ ++DES Q++ K ++K V+ + W+ A+D S G+P ILDE
Sbjct: 104 YYDIDLDESLTQEDLEKIEKRMKELAKTKYEVVKKKVSWQEARDTFESRGEPYKVEILDE 163
Query: 617 N 619
N
Sbjct: 164 N 164
>sp|Q9SI20|EF1B2_ARATH Probable elongation factor 1-beta 2 (EF-1-beta 2)
Length = 231
Score = 29.6 bits (65), Expect = 9.5
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 193 DVFGSDTEDEDKNKEKRANNIKA 261
D+FG +TE+E K E+RA ++KA
Sbjct: 111 DLFGEETEEEKKAAEERAASVKA 133
>sp|P40943|XYN1_BACST Endo-1,4-beta-xylanase precursor (Xylanase) (1,4-beta-D-xylan
xylanohydrolase)
Length = 407
Score = 29.6 bits (65), Expect = 9.5
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 20/83 (24%)
Frame = +2
Query: 467 RPFDPMYYEDEMDESEVQDEEGKTR-------LKLKVEN-------TIRWR------IAK 586
R F+ + E+ M +Q EEGK +K N T+ W
Sbjct: 78 RHFNSIVAENVMKPISIQPEEGKFNFEQADRIVKFAKANGMDIRFHTLVWHSQVPQWFFL 137
Query: 587 DSEGQPILDENDQPKRESNARMI 655
D EG+P+++E D KRE N +++
Sbjct: 138 DKEGKPMVNETDPVKREQNKQLL 160
>sp|P48006|EF1B1_ARATH Elongation factor 1-beta 1 (EF-1-beta 1)
Length = 231
Score = 29.6 bits (65), Expect = 9.5
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 193 DVFGSDTEDEDKNKEKRANNIKA 261
D+FG +TE+E K E+RA ++KA
Sbjct: 111 DLFGEETEEEKKAAEERAASVKA 133
>sp|P04595|VIF_HV2RO Virion infectivity factor (Vif) (SOR protein) (Q protein)
Length = 215
Score = 29.6 bits (65), Expect = 9.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 605 ILDENDQPKRESNARMIRWSDGSLSLHLGREIFRRAHDRHQRGPQP 742
++ +ND+P+R+S R R D L L ++ R R P P
Sbjct: 155 VVQQNDRPQRDSTTRKQRRRDYRRGLRLAKQDSRSHKQRSSESPTP 200
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.306 0.127 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,980,812
Number of Sequences: 369166
Number of extensions: 1120536
Number of successful extensions: 2273
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2268
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7212136400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)