Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_A06
(457 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 146 2e-35
sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 144 7e-35
sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 >gi|52000789... 144 1e-34
sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 143 2e-34
sp|Q19877|RS23_CAEEL 40S ribosomal protein S23 141 8e-34
sp|P90707|RS23_BRUMA 40S ribosomal protein S23 139 2e-33
sp|P62267|RS23_MOUSE 40S ribosomal protein S23 >gi|54039461... 137 1e-32
sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23 137 1e-32
sp|Q6SA96|RS23_PIG 40S ribosomal protein S23 136 2e-32
sp|Q9DFR4|RS23_GILMI 40S ribosomal protein S23 135 4e-32
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23
Length = 143
Score = 146 bits (369), Expect = 2e-35
Identities = 68/80 (85%), Positives = 76/80 (95%)
Frame = +1
Query: 28 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 207
GKP G+RT RKL+ HR+++RW DKDYKK+HLGTR+KSNPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQ 61
Query: 208 PNSAIRKCVRVQLIKNGKKL 267
PNSAIRKCVRVQLIKNGKK+
Sbjct: 62 PNSAIRKCVRVQLIKNGKKI 81
Score = 121 bits (303), Expect = 8e-28
Identities = 58/65 (89%), Positives = 62/65 (95%)
Frame = +3
Query: 258 KKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKK 437
KKITAFVP DGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVA+VSLLALYK KK
Sbjct: 79 KKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQKK 138
Query: 438 ERPRA 452
ERPR+
Sbjct: 139 ERPRS 143
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23
Length = 143
Score = 144 bits (364), Expect = 7e-35
Identities = 68/80 (85%), Positives = 74/80 (92%)
Frame = +1
Query: 28 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 207
GKP G+RT RK R HR+ +RW DKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 208 PNSAIRKCVRVQLIKNGKKL 267
PNSAIRKCVRVQLIKNGKK+
Sbjct: 62 PNSAIRKCVRVQLIKNGKKI 81
Score = 122 bits (305), Expect = 5e-28
Identities = 58/65 (89%), Positives = 62/65 (95%)
Frame = +3
Query: 258 KKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKK 437
KKITAFVP DGCLN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK KK
Sbjct: 79 KKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 138
Query: 438 ERPRA 452
ERPR+
Sbjct: 139 ERPRS 143
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23
sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23
Length = 143
Score = 144 bits (362), Expect = 1e-34
Identities = 68/80 (85%), Positives = 75/80 (93%)
Frame = +1
Query: 28 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 207
GKP GIRT RK HR+++RWADKDYKKAH+GTR+K+NPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 208 PNSAIRKCVRVQLIKNGKKL 267
PNSAIRKCVRVQLIKNGKK+
Sbjct: 62 PNSAIRKCVRVQLIKNGKKV 81
Score = 120 bits (300), Expect = 2e-27
Identities = 57/65 (87%), Positives = 61/65 (93%)
Frame = +3
Query: 258 KKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKK 437
KK+TAFVP DGCLN IEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK KK
Sbjct: 79 KKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 138
Query: 438 ERPRA 452
ERPR+
Sbjct: 139 ERPRS 143
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23
Length = 143
Score = 143 bits (361), Expect = 2e-34
Identities = 68/80 (85%), Positives = 74/80 (92%)
Frame = +1
Query: 28 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 207
GKP G+RT RK HR+ +RWADKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 208 PNSAIRKCVRVQLIKNGKKL 267
PNSAIRKCVRVQLIKNGKK+
Sbjct: 62 PNSAIRKCVRVQLIKNGKKI 81
Score = 118 bits (295), Expect = 7e-27
Identities = 57/65 (87%), Positives = 61/65 (93%)
Frame = +3
Query: 258 KKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKK 437
KKITAFVP DG LN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK KK
Sbjct: 79 KKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 138
Query: 438 ERPRA 452
ERPR+
Sbjct: 139 ERPRS 143
>sp|Q19877|RS23_CAEEL 40S ribosomal protein S23
Length = 143
Score = 141 bits (355), Expect = 8e-34
Identities = 65/80 (81%), Positives = 74/80 (92%)
Frame = +1
Query: 28 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 207
GKP G+ T RKL+ HR+++RW DK YKKAH+GTR+KSNPFGGASHAKGIVLEK+GVEAKQ
Sbjct: 2 GKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQ 61
Query: 208 PNSAIRKCVRVQLIKNGKKL 267
PNSAIRKCVRVQLIKNGKK+
Sbjct: 62 PNSAIRKCVRVQLIKNGKKI 81
Score = 127 bits (319), Expect = 1e-29
Identities = 60/65 (92%), Positives = 64/65 (98%)
Frame = +3
Query: 258 KKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKK 437
KKITAFVPNDGCLNF+EENDEVLVSGFGRSGHAVGDIPGVRFKIVKVAN SL+AL+KGKK
Sbjct: 79 KKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKK 138
Query: 438 ERPRA 452
ERPR+
Sbjct: 139 ERPRS 143
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23
Length = 143
Score = 139 bits (351), Expect = 2e-33
Identities = 66/80 (82%), Positives = 72/80 (90%)
Frame = +1
Query: 28 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 207
GKP GIR RKL+ HR+ +RW DK YKKAHLGTR+K+NPFG ASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQ 61
Query: 208 PNSAIRKCVRVQLIKNGKKL 267
PNSAIRKCVRVQLIKNGKK+
Sbjct: 62 PNSAIRKCVRVQLIKNGKKI 81
Score = 125 bits (313), Expect = 6e-29
Identities = 59/65 (90%), Positives = 63/65 (96%)
Frame = +3
Query: 258 KKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKK 437
KKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFKIVKVAN SL+AL+KGKK
Sbjct: 79 KKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKK 138
Query: 438 ERPRA 452
ERPR+
Sbjct: 139 ERPRS 143
>sp|P62267|RS23_MOUSE 40S ribosomal protein S23
sp|P62298|RS23_CHILA 40S ribosomal protein S23
sp|P62266|RS23_HUMAN 40S ribosomal protein S23
sp|P62268|RS23_RAT 40S ribosomal protein S23
Length = 143
Score = 137 bits (345), Expect = 1e-32
Identities = 65/80 (81%), Positives = 71/80 (88%)
Frame = +1
Query: 28 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 207
GK G+RT RKLR HR+ ++W DK YKKAHLGT K+NPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 208 PNSAIRKCVRVQLIKNGKKL 267
PNSAIRKCVRVQLIKNGKK+
Sbjct: 62 PNSAIRKCVRVQLIKNGKKI 81
Score = 128 bits (322), Expect = 5e-30
Identities = 61/65 (93%), Positives = 64/65 (98%)
Frame = +3
Query: 258 KKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKK 437
KKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYKGKK
Sbjct: 79 KKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 138
Query: 438 ERPRA 452
ERPR+
Sbjct: 139 ERPRS 143
>sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23
Length = 143
Score = 137 bits (345), Expect = 1e-32
Identities = 65/80 (81%), Positives = 72/80 (90%)
Frame = +1
Query: 28 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 207
GK G+RT RKLR HR++++W DK YKKAHLGT K+NPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRDHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 208 PNSAIRKCVRVQLIKNGKKL 267
PNSAIRKCVRVQLIKNGKK+
Sbjct: 62 PNSAIRKCVRVQLIKNGKKI 81
Score = 128 bits (322), Expect = 5e-30
Identities = 61/65 (93%), Positives = 64/65 (98%)
Frame = +3
Query: 258 KKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKK 437
KKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYKGKK
Sbjct: 79 KKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 138
Query: 438 ERPRA 452
ERPR+
Sbjct: 139 ERPRS 143
>sp|Q6SA96|RS23_PIG 40S ribosomal protein S23
Length = 143
Score = 136 bits (343), Expect = 2e-32
Identities = 65/80 (81%), Positives = 70/80 (87%)
Frame = +1
Query: 28 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 207
GK G+RT RKLR HR+ +W DK YKKAHLGT K+NPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRSHRRDHKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 208 PNSAIRKCVRVQLIKNGKKL 267
PNSAIRKCVRVQLIKNGKK+
Sbjct: 62 PNSAIRKCVRVQLIKNGKKI 81
Score = 128 bits (322), Expect = 5e-30
Identities = 61/65 (93%), Positives = 64/65 (98%)
Frame = +3
Query: 258 KKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKK 437
KKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYKGKK
Sbjct: 79 KKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 138
Query: 438 ERPRA 452
ERPR+
Sbjct: 139 ERPRS 143
>sp|Q9DFR4|RS23_GILMI 40S ribosomal protein S23
Length = 143
Score = 135 bits (340), Expect = 4e-32
Identities = 64/80 (80%), Positives = 71/80 (88%)
Frame = +1
Query: 28 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 207
GK G+RT RKLR HR++++W DK YKKAHLGT K+NPFG ASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGSASHAKGIVLEKVGVEAKQ 61
Query: 208 PNSAIRKCVRVQLIKNGKKL 267
PNSAIRKCVRVQLIKNGKK+
Sbjct: 62 PNSAIRKCVRVQLIKNGKKI 81
Score = 117 bits (294), Expect = 9e-27
Identities = 55/65 (84%), Positives = 61/65 (93%)
Frame = +3
Query: 258 KKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYKGKK 437
KKITAFVPNDGCLNF EENDEVLV+GFGR HAVGDIPGVRFK+V++ANVSLLALYKG K
Sbjct: 79 KKITAFVPNDGCLNFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEMANVSLLALYKGXK 138
Query: 438 ERPRA 452
ERP++
Sbjct: 139 ERPKS 143
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,498,790
Number of Sequences: 369166
Number of extensions: 992556
Number of successful extensions: 3368
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3340
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)