Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_P24
(275 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99MA9|NKX61_MOUSE Homeobox protein Nkx-6.1 33 0.16
sp|O35762|NKX61_RAT Homeobox protein Nkx-6.1 32 0.35
sp|P78426|NKX61_HUMAN Homeobox protein Nkx-6.1 31 1.0
sp|Q81II1|ARCA_BACCR Arginine deiminase (ADI) (Arginine dih... 29 3.0
sp|Q6HP29|ARCA_BACHK Arginine deiminase (ADI) (Arginine dih... 29 3.0
sp|Q73E87|ARCA_BACC1 Arginine deiminase (ADI) (Arginine dih... 29 3.0
sp|P12557|HEMA_NDVM Hemagglutinin-neuraminidase 29 3.0
sp|P39020|MEOX2_RAT Homeobox protein MOX-2 (Growth arrest-s... 29 3.9
sp|P32770|NRP1_YEAST Asparagine-rich protein (ARP protein) 29 3.9
sp|P08359|ENV_FLVGL Env polyprotein precursor [Contains: Co... 29 3.9
>sp|Q99MA9|NKX61_MOUSE Homeobox protein Nkx-6.1
Length = 365
Score = 33.5 bits (75), Expect = 0.16
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 79 PCYLPQYNVLAMNPPAASSNTGRHISQTPSVGSCTPRSNIATAAGP-SDLGGQPQ 240
P Y Y L PP++SS++ S +P +GS P AAG S LG PQ
Sbjct: 34 PLYPAAYPPLPTGPPSSSSSSSSSSSPSPPLGSHNPGGLKPPAAGGLSSLGSPPQ 88
>sp|O35762|NKX61_RAT Homeobox protein Nkx-6.1
Length = 365
Score = 32.3 bits (72), Expect = 0.35
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 79 PCYLPQYNVLAMNPPAASSNTGRHISQTPSVGSCTPRSNIATAAGP-SDLGGQPQ 240
P Y Y L PP++SS++ S +P +G+ P AAG S LG PQ
Sbjct: 34 PLYPAAYPPLPTGPPSSSSSSSSSSSPSPPLGAHNPGGLKPPAAGGLSSLGSPPQ 88
>sp|P78426|NKX61_HUMAN Homeobox protein Nkx-6.1
Length = 367
Score = 30.8 bits (68), Expect = 1.0
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 79 PCYLPQYNVLAMNPPAASSNTGRHISQTPSVGSCTPRSNIATAAGP-SDLGGQPQ 240
P Y Y L PP++SS++ S +P +G+ P A G S LG PQ
Sbjct: 34 PLYPAAYPPLPAGPPSSSSSSSSSSSPSPPLGTHNPGGLKPPATGGLSSLGSPPQ 88
>sp|Q81II1|ARCA_BACCR Arginine deiminase (ADI) (Arginine dihydrolase) (AD)
Length = 410
Score = 29.3 bits (64), Expect = 3.0
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 22 NQFHTTNMTQLMSEWADNYPCYL-PQYNVLAMNPPAASSNTGRHISQ 159
N+ T+ T L D+YP YL P N+ PAAS G I++
Sbjct: 128 NEIETSKKTHLYELMEDHYPFYLDPMPNLYFTRDPAASVGDGLTINK 174
>sp|Q6HP29|ARCA_BACHK Arginine deiminase (ADI) (Arginine dihydrolase) (AD)
Length = 410
Score = 29.3 bits (64), Expect = 3.0
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 22 NQFHTTNMTQLMSEWADNYPCYL-PQYNVLAMNPPAASSNTGRHISQ 159
N+ T+ T L D+YP YL P N+ PAAS G I++
Sbjct: 128 NEIETSKKTHLYELMEDHYPFYLDPMPNLYFTRDPAASVGDGLTINK 174
>sp|Q73E87|ARCA_BACC1 Arginine deiminase (ADI) (Arginine dihydrolase) (AD)
Length = 410
Score = 29.3 bits (64), Expect = 3.0
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 22 NQFHTTNMTQLMSEWADNYPCYL-PQYNVLAMNPPAASSNTGRHISQ 159
N+ T+ T L D+YP YL P N+ PAAS G I++
Sbjct: 128 NEIETSKKTHLYELMEDHYPFYLDPMPNLYFTRDPAASVGDGLTINK 174
>sp|P12557|HEMA_NDVM Hemagglutinin-neuraminidase
Length = 571
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 13/59 (22%)
Frame = +1
Query: 16 FGNQFHTTNM--TQLMSEWADNYP-----------CYLPQYNVLAMNPPAASSNTGRHI 153
F Q+H ++ T L +W NYP + P Y L N P+ ++ GR++
Sbjct: 277 FDGQYHEKDLDVTTLFGDWVANYPGVGGGSFIDSRVWFPIYGGLKPNSPSDTAQEGRYV 335
>sp|P39020|MEOX2_RAT Homeobox protein MOX-2 (Growth arrest-specific homeobox)
Length = 303
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 106 LAMNPPAASSNTGRHISQTPSVGSCTPRSNIATAAGPSDLGGQPQTKK 249
L +PP SN+ S TP+ +C PR A P+++ + +K+
Sbjct: 119 LGSSPPVLCSNSSSLGSSTPTGAACAPRDYGRQALSPAEVEKRSGSKR 166
>sp|P32770|NRP1_YEAST Asparagine-rich protein (ARP protein)
Length = 719
Score = 28.9 bits (63), Expect = 3.9
Identities = 19/74 (25%), Positives = 40/74 (54%)
Frame = +1
Query: 7 QRNFGNQFHTTNMTQLMSEWADNYPCYLPQYNVLAMNPPAASSNTGRHISQTPSVGSCTP 186
+ N N+ ++ + + + S A N+P P++N++A N PAA + H P++ +
Sbjct: 401 RNNLNNRVNSGSSSNI-SNTAANHPYGAPEFNMIANNTPAALTYNRAHF---PAITPLSR 456
Query: 187 RSNIATAAGPSDLG 228
++++ A PS+ G
Sbjct: 457 QNSLNMA--PSNSG 468
>sp|P08359|ENV_FLVGL Env polyprotein precursor [Contains: Coat protein GP70; Spike
protein p15E]
Length = 642
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 118 PPAASSNTGRHIS-QTPSVGSCTPRSNIATAAGPSDLG 228
PP+ S TG ++ Q P PRS T GP +G
Sbjct: 248 PPSRQSQTGSKVATQRPQTNESAPRSVAPTTMGPKRIG 285
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,308,140
Number of Sequences: 369166
Number of extensions: 594494
Number of successful extensions: 1519
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 68,354,980
effective HSP length: 61
effective length of database: 57,086,145
effective search space used: 1712584350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)