Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_P21
(548 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P97351|RS3A_MOUSE 40S ribosomal protein S3a 183 2e-46
sp|P61246|RS3A_FELCA 40S ribosomal protein S3a 183 2e-46
sp|P61247|RS3A_HUMAN 40S ribosomal protein S3a 183 2e-46
sp|P49242|RS3A_RAT 40S ribosomal protein S3a (V-fos transfo... 183 2e-46
sp|P49395|RS3A_APLCA 40S ribosomal protein S3a (Lysine-rich... 183 3e-46
sp|O73813|RS3A_ORYLA 40S ribosomal protein S3a (V-fos trans... 183 3e-46
sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a 178 7e-45
sp|O43999|RS3A_EIMTE 40S ribosomal protein S3a (EtS3a) 178 7e-45
sp|P49396|RS3A_BRARA 40S ribosomal protein S3a (S phase-spe... 178 9e-45
sp|P49198|RS3A_HELAN 40S ribosomal protein S3a 174 1e-43
>sp|P97351|RS3A_MOUSE 40S ribosomal protein S3a
Length = 264
Score = 183 bits (465), Expect = 2e-46
Identities = 97/182 (53%), Positives = 124/182 (68%)
Frame = +3
Query: 3 FLKKARYVIKAPSMFPLRGRARTLVSKTQGTKIDSEGLKNRVATMSLGELNEKTEDTFIK 182
F KK Y +KAP+MF +R +TLV++TQGTKI S+GLK RV +SL +L + E F K
Sbjct: 25 FSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRK 83
Query: 183 FSLQIEDVQGNQWLTSFKGMQLTTDKMCSMVNKWQTTIECFADVKTTDNFHLRVFVIAFT 362
F L EDVQG LT+F GM LT DKMCSMV KWQT IE DVKTTD + LR+F + FT
Sbjct: 84 FKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143
Query: 363 KKASSQLKKHTYAQAQPIKSIIDIMREVINAEISSCDIKEVVKKLCIDSIEKDIAKKCSY 542
KK ++Q++K +YAQ Q ++ I M E++ E+ + D+KEVV KL DSI KDI K C
Sbjct: 144 KKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQS 203
Query: 543 IF 548
I+
Sbjct: 204 IY 205
>sp|P61246|RS3A_FELCA 40S ribosomal protein S3a
Length = 260
Score = 183 bits (465), Expect = 2e-46
Identities = 97/182 (53%), Positives = 124/182 (68%)
Frame = +3
Query: 3 FLKKARYVIKAPSMFPLRGRARTLVSKTQGTKIDSEGLKNRVATMSLGELNEKTEDTFIK 182
F KK Y +KAP+MF +R +TLV++TQGTKI S+GLK RV +SL +L + E F K
Sbjct: 21 FSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRK 79
Query: 183 FSLQIEDVQGNQWLTSFKGMQLTTDKMCSMVNKWQTTIECFADVKTTDNFHLRVFVIAFT 362
F L EDVQG LT+F GM LT DKMCSMV KWQT IE DVKTTD + LR+F + FT
Sbjct: 80 FKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 139
Query: 363 KKASSQLKKHTYAQAQPIKSIIDIMREVINAEISSCDIKEVVKKLCIDSIEKDIAKKCSY 542
KK ++Q++K +YAQ Q ++ I M E++ E+ + D+KEVV KL DSI KDI K C
Sbjct: 140 KKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQS 199
Query: 543 IF 548
I+
Sbjct: 200 IY 201
>sp|P61247|RS3A_HUMAN 40S ribosomal protein S3a
Length = 264
Score = 183 bits (465), Expect = 2e-46
Identities = 97/182 (53%), Positives = 124/182 (68%)
Frame = +3
Query: 3 FLKKARYVIKAPSMFPLRGRARTLVSKTQGTKIDSEGLKNRVATMSLGELNEKTEDTFIK 182
F KK Y +KAP+MF +R +TLV++TQGTKI S+GLK RV +SL +L + E F K
Sbjct: 25 FSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRK 83
Query: 183 FSLQIEDVQGNQWLTSFKGMQLTTDKMCSMVNKWQTTIECFADVKTTDNFHLRVFVIAFT 362
F L EDVQG LT+F GM LT DKMCSMV KWQT IE DVKTTD + LR+F + FT
Sbjct: 84 FKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143
Query: 363 KKASSQLKKHTYAQAQPIKSIIDIMREVINAEISSCDIKEVVKKLCIDSIEKDIAKKCSY 542
KK ++Q++K +YAQ Q ++ I M E++ E+ + D+KEVV KL DSI KDI K C
Sbjct: 144 KKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQS 203
Query: 543 IF 548
I+
Sbjct: 204 IY 205
>sp|P49242|RS3A_RAT 40S ribosomal protein S3a (V-fos transformation effector protein)
[Contains: 40S ribosomal protein S3b]
Length = 264
Score = 183 bits (465), Expect = 2e-46
Identities = 97/182 (53%), Positives = 124/182 (68%)
Frame = +3
Query: 3 FLKKARYVIKAPSMFPLRGRARTLVSKTQGTKIDSEGLKNRVATMSLGELNEKTEDTFIK 182
F KK Y +KAP+MF +R +TLV++TQGTKI S+GLK RV +SL +L + E F K
Sbjct: 25 FSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRK 83
Query: 183 FSLQIEDVQGNQWLTSFKGMQLTTDKMCSMVNKWQTTIECFADVKTTDNFHLRVFVIAFT 362
F L EDVQG LT+F GM LT DKMCSMV KWQT IE DVKTTD + LR+F + FT
Sbjct: 84 FKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143
Query: 363 KKASSQLKKHTYAQAQPIKSIIDIMREVINAEISSCDIKEVVKKLCIDSIEKDIAKKCSY 542
KK ++Q++K +YAQ Q ++ I M E++ E+ + D+KEVV KL DSI KDI K C
Sbjct: 144 KKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQS 203
Query: 543 IF 548
I+
Sbjct: 204 IY 205
>sp|P49395|RS3A_APLCA 40S ribosomal protein S3a (Lysine-rich protein KRP-A)
Length = 265
Score = 183 bits (464), Expect = 3e-46
Identities = 100/182 (54%), Positives = 125/182 (68%)
Frame = +3
Query: 3 FLKKARYVIKAPSMFPLRGRARTLVSKTQGTKIDSEGLKNRVATMSLGELNEKTEDTFIK 182
F KK Y +KAPSMF +R +TLV+++QGTKI S+ LK RV +SL +L + E TF K
Sbjct: 25 FTKKEWYDVKAPSMFAVRQIGKTLVTRSQGTKIASDNLKGRVFEVSLADL-QNDEVTFRK 83
Query: 183 FSLQIEDVQGNQWLTSFKGMQLTTDKMCSMVNKWQTTIECFADVKTTDNFHLRVFVIAFT 362
F L E+VQG LT+F GM LT DK+CSMV KWQT IE DVKTTD + LRVF I FT
Sbjct: 84 FKLIAEEVQGRNVLTNFSGMSLTRDKLCSMVKKWQTLIEANVDVKTTDGYLLRVFAIGFT 143
Query: 363 KKASSQLKKHTYAQAQPIKSIIDIMREVINAEISSCDIKEVVKKLCIDSIEKDIAKKCSY 542
KK ++Q+KK YAQ +K+I M E+++ E+SS D+KEVV KL DSI KDI K C
Sbjct: 144 KKRNNQVKKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKLIPDSIGKDIEKSCQG 203
Query: 543 IF 548
I+
Sbjct: 204 IY 205
>sp|O73813|RS3A_ORYLA 40S ribosomal protein S3a (V-fos transformation effector protein)
Length = 266
Score = 183 bits (464), Expect = 3e-46
Identities = 96/182 (52%), Positives = 124/182 (68%)
Frame = +3
Query: 3 FLKKARYVIKAPSMFPLRGRARTLVSKTQGTKIDSEGLKNRVATMSLGELNEKTEDTFIK 182
F KK Y +KAP+MF +R +TLV++TQGTKI S+GLK RV +SL +L + E F K
Sbjct: 25 FSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRK 83
Query: 183 FSLQIEDVQGNQWLTSFKGMQLTTDKMCSMVNKWQTTIECFADVKTTDNFHLRVFVIAFT 362
F L EDVQG LT+F GM LT DKMCSMV KWQT IE DVKTTD + LR+F + FT
Sbjct: 84 FKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143
Query: 363 KKASSQLKKHTYAQAQPIKSIIDIMREVINAEISSCDIKEVVKKLCIDSIEKDIAKKCSY 542
KK ++Q++K +YAQ Q ++ I M E++ E+ + D+KEVV KL DS+ KDI K C
Sbjct: 144 KKRNNQVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQS 203
Query: 543 IF 548
I+
Sbjct: 204 IY 205
>sp|P48154|RS3A_CAEEL 40S ribosomal protein S3a
Length = 257
Score = 178 bits (452), Expect = 7e-45
Identities = 97/182 (53%), Positives = 121/182 (66%)
Frame = +3
Query: 3 FLKKARYVIKAPSMFPLRGRARTLVSKTQGTKIDSEGLKNRVATMSLGELNEKTEDTFIK 182
F +K Y IKAP+MF R +TL+++TQGTKI SEGLK RV +SLG+LN D F K
Sbjct: 23 FSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDLNNSEAD-FRK 81
Query: 183 FSLQIEDVQGNQWLTSFKGMQLTTDKMCSMVNKWQTTIECFADVKTTDNFHLRVFVIAFT 362
F L EDVQG LT+F M +T DK+CS+V KW T IE VKTTD + LRVFVIAFT
Sbjct: 82 FKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFT 141
Query: 363 KKASSQLKKHTYAQAQPIKSIIDIMREVINAEISSCDIKEVVKKLCIDSIEKDIAKKCSY 542
KK+ +Q+KK +Y + I+ I M I E++ CD+KEVV KL DSI KDI K CS
Sbjct: 142 KKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSK 201
Query: 543 IF 548
++
Sbjct: 202 LY 203
>sp|O43999|RS3A_EIMTE 40S ribosomal protein S3a (EtS3a)
Length = 264
Score = 178 bits (452), Expect = 7e-45
Identities = 96/182 (52%), Positives = 122/182 (67%)
Frame = +3
Query: 3 FLKKARYVIKAPSMFPLRGRARTLVSKTQGTKIDSEGLKNRVATMSLGELNEKTEDTFIK 182
F KK Y +KAP+MF +R +TLV++TQGTKI S+GLK RV +SL +L + E F K
Sbjct: 25 FSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADL-QNDEVAFRK 83
Query: 183 FSLQIEDVQGNQWLTSFKGMQLTTDKMCSMVNKWQTTIECFADVKTTDNFHLRVFVIAFT 362
F L EDVQG LT+F GM LT DKM SMV KWQT IE DVKTTD + LR+F + FT
Sbjct: 84 FKLITEDVQGKNCLTNFHGMDLTRDKMFSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT 143
Query: 363 KKASSQLKKHTYAQAQPIKSIIDIMREVINAEISSCDIKEVVKKLCIDSIEKDIAKKCSY 542
KK ++Q++K +YAQ Q ++ I M E++ E + D+KEVV KL DSI KDI K C
Sbjct: 144 KKRNNQIRKTSYAQHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSIGKDIEKACQS 203
Query: 543 IF 548
I+
Sbjct: 204 IY 205
>sp|P49396|RS3A_BRARA 40S ribosomal protein S3a (S phase-specific protein BIS289)
Length = 262
Score = 178 bits (451), Expect = 9e-45
Identities = 98/183 (53%), Positives = 123/183 (67%), Gaps = 1/183 (0%)
Frame = +3
Query: 3 FLKKARYVIKAPSMFPLRGRARTLVSKTQGTKIDSEGLKNRVATMSLGELNEKTEDTFIK 182
F KK Y IKAPS F R +TLVS+TQGTKI SEGLK+RV +SL +LN+ + + K
Sbjct: 24 FAKKDWYDIKAPSSFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLNKDEDQAYRK 83
Query: 183 FSLQIEDVQGNQWLTSFKGMQLTTDKMCSMVNKWQTTIECFADVKTTDNFHLRVFVIAFT 362
L+ EDVQG LT F GM TTDK+ S+V KWQT IE DVKTTDN+ LR+F IAFT
Sbjct: 84 IRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIESHVDVKTTDNYTLRLFCIAFT 143
Query: 363 KKASSQLKKHTYAQAQPIKSIIDIMREV-INAEISSCDIKEVVKKLCIDSIEKDIAKKCS 539
K+ ++Q+K+ YAQ+ I+ I MRE+ I E SSCD+KE+V K +SI KDI K
Sbjct: 144 KRRANQVKRTCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQ 203
Query: 540 YIF 548
I+
Sbjct: 204 GIY 206
>sp|P49198|RS3A_HELAN 40S ribosomal protein S3a
Length = 260
Score = 174 bits (442), Expect = 1e-43
Identities = 92/182 (50%), Positives = 125/182 (68%)
Frame = +3
Query: 3 FLKKARYVIKAPSMFPLRGRARTLVSKTQGTKIDSEGLKNRVATMSLGELNEKTEDTFIK 182
F KK Y IKAPS+F R +TLV++TQGTKI SEGLK+RV +SL +L + ++ K
Sbjct: 24 FSKKDWYDIKAPSLFITRNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDHSYRK 83
Query: 183 FSLQIEDVQGNQWLTSFKGMQLTTDKMCSMVNKWQTTIECFADVKTTDNFHLRVFVIAFT 362
L+ EDVQG LT+F GM +TTDK+ S+V KWQ+ IE DVKTTDNF LR+F I FT
Sbjct: 84 IRLRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSLIEAHVDVKTTDNFTLRMFCIGFT 143
Query: 363 KKASSQLKKHTYAQAQPIKSIIDIMREVINAEISSCDIKEVVKKLCIDSIEKDIAKKCSY 542
KK ++Q+K+ YAQ+ IK I MRE++ + +CD+KE+V+K +SI ++I K S
Sbjct: 144 KKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSS 203
Query: 543 IF 548
I+
Sbjct: 204 IY 205
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,420,453
Number of Sequences: 369166
Number of extensions: 1034226
Number of successful extensions: 2758
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2742
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)