Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_P19
(230 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor 38 0.006
sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromo... 32 0.35
sp|Q00918|LTBP1_RAT Latent transforming growth factor beta ... 29 3.0
sp|Q81K82|GLGB_BACAN 1,4-alpha-glucan branching enzyme (Gly... 29 3.9
sp|Q72SG7|TIG_LEPIC Trigger factor (TF) >gi|41018229|sp|Q8F... 29 3.9
sp|P83626|TNR26_MOUSE Tumor necrosis factor receptor superf... 28 5.1
sp|Q10420|MESI_LEUME Probable mesentericin Y105 immunity pr... 28 6.7
sp|P0A1J9|FLIG_SALTY Flagellar motor switch protein fliG >g... 28 6.7
sp|P0ABZ1|FLIG_ECOLI Flagellar motor switch protein fliG >g... 28 6.7
sp|O32198|LIAS_BACSU Sensor protein liaS 28 6.7
>sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor
Length = 180
Score = 38.1 bits (87), Expect = 0.006
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +2
Query: 68 CEKTCHLCGDWDDSRRDCGYAKERGDCDKID----ERICRKTCAVC 193
C KTC+ C +D+ + C RG C K D ++ C K+C +C
Sbjct: 134 CPKTCNACNICEDANKMCPIWVPRGFCSKFDHDKVQKSCAKSCNIC 179
>sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromosome II precursor
Length = 154
Score = 32.3 bits (72), Expect = 0.35
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 14/66 (21%)
Frame = +2
Query: 47 SPDVYENCEKTCHLCGDWD--------DSRRDCGYAKERGDCDKI------DERICRKTC 184
+P + + C KTC CG DS +C ++ G C ++ C KTC
Sbjct: 88 TPLLQQFCPKTCGFCGGGSTAAPVQCVDSSTNCANWEKNGFCSSTFYDCANKKQYCAKTC 147
Query: 185 AVCT*T 202
+CT T
Sbjct: 148 KLCTTT 153
>sp|Q00918|LTBP1_RAT Latent transforming growth factor beta binding protein 1 precursor
(LTBP-1) (Transforming growth factor beta-1 binding
protein 1) (TGF-beta1-BP-1) (Transforming growth factor
beta-1 masking protein, large subunit)
Length = 1712
Score = 29.3 bits (64), Expect = 3.0
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 35 EECISPDVYENCEKTCHLCGDWDDSRRDCGYA-KERGDCDKIDERICRKTC 184
+EC+ PDV + + + G + D GY RG C+ IDE + TC
Sbjct: 951 DECLRPDVCRD-GRCINTAGAFRCEYCDSGYRMSRRGHCEDIDECLTPSTC 1000
>sp|Q81K82|GLGB_BACAN 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme) (BE)
(1,4-alpha-D-glucan:1,4-alpha-D-glucan
6-glucosyl-transferase)
Length = 645
Score = 28.9 bits (63), Expect = 3.9
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 18 VLENEGKSVSVQMFMRIVRKLAIYVEIGMTADEIV--DMQKKEEIVIKSMREFAEKLAQF 191
V + +G + + + R +K ++Y E MT E+ +KKE+ + S RE AE+L +
Sbjct: 121 VFDIKGYEWNDKNWSRKKKKKSVYKE-AMTVYELHFGSWKKKEDGTLYSYREMAEELIPY 179
Query: 192 ALKHYF 209
++H F
Sbjct: 180 VVEHQF 185
>sp|Q72SG7|TIG_LEPIC Trigger factor (TF)
sp|Q8F351|TIG_LEPIN Trigger factor (TF)
Length = 451
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 102 MTADEIVDMQKKEEIVIKSMREFAEKLAQFALKHYF 209
MT ++ +M +K+ +K ++E +KLA+ LKHYF
Sbjct: 328 MTMEKYANMVQKD---LKEVQESFQKLAETRLKHYF 360
>sp|P83626|TNR26_MOUSE Tumor necrosis factor receptor superfamily member 26 precursor (TNF
receptor homolog 3)
Length = 204
Score = 28.5 bits (62), Expect = 5.1
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 2 DCVSECFGK*GEECISPDVYENCEKTCHLCGDWDDSR--RDCGYAKERGDCDKID 160
D V +C K G C S ENC + CH C D R R C + CDK D
Sbjct: 100 DRVCQC--KQGTYCDS----ENCLERCHTCSSCPDGRVVRKCNATMDT-VCDKFD 147
>sp|Q10420|MESI_LEUME Probable mesentericin Y105 immunity protein
Length = 113
Score = 28.1 bits (61), Expect = 6.7
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +3
Query: 6 VCLSVLENEGKSVSVQMFMRIVRKLAIYVEIGMTADEIVDMQKKEEIVIK 155
+C +L+ K + Q ++ +L Y+ I + +I+ +K+EE++IK
Sbjct: 34 ICDVLLQVSKKLDNTQSVEALINRLVNYIRITASTYKIIFSKKEEELIIK 83
>sp|P0A1J9|FLIG_SALTY Flagellar motor switch protein fliG
sp|P0A1K0|FLIG_SALTI Flagellar motor switch protein fliG
Length = 331
Score = 28.1 bits (61), Expect = 6.7
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +3
Query: 105 TADEIVDMQK--KEEIVIKSMREFAEKLAQFALKHYF 209
TA EI+++ K +EE VI ++REF +LAQ + F
Sbjct: 198 TAAEIINLMKTQQEEAVITAVREFDGELAQKIIDEMF 234
>sp|P0ABZ1|FLIG_ECOLI Flagellar motor switch protein fliG
sp|P0ABZ2|FLIG_ECOL6 Flagellar motor switch protein fliG
sp|P0ABZ3|FLIG_ECO57 Flagellar motor switch protein fliG
Length = 331
Score = 28.1 bits (61), Expect = 6.7
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +3
Query: 105 TADEIVDMQK--KEEIVIKSMREFAEKLAQFALKHYF 209
TA EI+++ K +EE VI ++REF +LAQ + F
Sbjct: 198 TAAEIINLMKTQQEEAVITAVREFDGELAQKIIDEMF 234
>sp|O32198|LIAS_BACSU Sensor protein liaS
Length = 360
Score = 28.1 bits (61), Expect = 6.7
Identities = 10/33 (30%), Positives = 24/33 (72%)
Frame = +3
Query: 93 EIGMTADEIVDMQKKEEIVIKSMREFAEKLAQF 191
EIG+ AD++ +M K+ E+ + S+++ + + A++
Sbjct: 106 EIGLAADQLNEMAKRVELQVASLQKLSNERAEW 138
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,123,757
Number of Sequences: 369166
Number of extensions: 409405
Number of successful extensions: 1484
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 68,354,980
effective HSP length: 47
effective length of database: 59,672,435
effective search space used: 1730500615
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)