Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_P06
(890 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9R013|CATF_MOUSE Cathepsin F precursor 156 6e-38
sp|Q26534|CATL_SCHMA Cathepsin L precursor (SMCL1) 154 4e-37
sp|Q9UBX1|CATF_HUMAN Cathepsin F precursor (CATSF) 153 7e-37
sp|P43295|A494_ARATH Probable cysteine proteinase A494 prec... 148 2e-35
sp|P14658|CYSP_TRYBB Cysteine proteinase precursor 147 3e-35
sp|P43296|RD19A_ARATH Cysteine proteinase RD19a precursor (... 147 3e-35
sp|P25775|LMCPA_LEIME Cysteine proteinase A precursor 142 1e-33
sp|P35591|CYSP1_LEIPI Cysteine proteinase 1 precursor (Amas... 142 1e-33
sp|P25804|CYSP_PEA Cysteine proteinase 15A precursor (Turgo... 139 8e-33
sp|Q05094|CYSP2_LEIPI Cysteine proteinase 2 precursor (Amas... 139 1e-32
>sp|Q9R013|CATF_MOUSE Cathepsin F precursor
Length = 462
Score = 156 bits (395), Expect = 6e-38
Identities = 80/155 (51%), Positives = 103/155 (66%), Gaps = 2/155 (1%)
Frame = +3
Query: 348 FDLFKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLENGTAEYGVTQFSDLTEEEFTN 527
F F +N+ YE+ EE + R+ +F N+ R+ ++ L+ GTA+YG+T+FSDLTEEEF
Sbjct: 165 FKDFMTTYNRTYESREEAQWRLTVFARNMIRAQKIQALDRGTAQYGITKFSDLTEEEFHT 224
Query: 528 QYLSPKYDLSKKPQRIAQIPQDIR--TGQAIDWRVLGAVTPVKNQGSCGSCWAFSTTGNI 701
YL+P L K+ R + I DWR GAVT VKNQG CGSCWAFS TGN+
Sbjct: 225 IYLNPL--LQKESGRKMSPAKSINDLAPPEWDWRKKGAVTEVKNQGMCGSCWAFSVTGNV 282
Query: 702 EGQWFIRTKRLVSLSEQQLVDCDTVDEGCNGGLPS 806
EGQWF+ L+SLSEQ+L+DCD VD+ C GGLPS
Sbjct: 283 EGQWFLNRGTLLSLSEQELLDCDKVDKACLGGLPS 317
Score = 35.4 bits (80), Expect = 0.22
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 757 LLTVTQLTKDAMVVYLAQAYKVIQQMGGLETESDYPYKADRKTC 888
LL ++ K + + AY I+ +GGLETE DY Y+ +TC
Sbjct: 301 LLDCDKVDKACLGGLPSNAYAAIKNLGGLETEDDYGYQGHVQTC 344
>sp|Q26534|CATL_SCHMA Cathepsin L precursor (SMCL1)
Length = 319
Score = 154 bits (388), Expect = 4e-37
Identities = 78/154 (50%), Positives = 104/154 (67%), Gaps = 4/154 (2%)
Frame = +3
Query: 357 FKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLENGTAEYGVTQFSDLTEEEFTNQYL 536
FK K+ K Y ++ E+E R N+F +NI ++ + + G+A YGVT +SDLT +EF +L
Sbjct: 23 FKLKYRKQY-HETEDEIRFNIFKSNILKAQLYQVFVRGSAIYGVTPYSDLTTDEFARTHL 81
Query: 537 SPKYDL----SKKPQRIAQIPQDIRTGQAIDWRVLGAVTPVKNQGSCGSCWAFSTTGNIE 704
+ + + S P + + +I DWR GAVT VKNQG CGSCWAFSTTGN+E
Sbjct: 82 TASWVVPSSRSNTPTSLGKEVNNIPKN--FDWREKGAVTEVKNQGMCGSCWAFSTTGNVE 139
Query: 705 GQWFIRTKRLVSLSEQQLVDCDTVDEGCNGGLPS 806
QWF +T +L+SLSEQQLVDCD +D+GCNGGLPS
Sbjct: 140 SQWFRKTGKLLSLSEQQLVDCDGLDDGCNGGLPS 173
Score = 31.2 bits (69), Expect = 4.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 805 AQAYKVIQQMGGLETESDYPYKADRKTC 888
+ AY+ I +MGGL E +YPY A + C
Sbjct: 173 SNAYESIIKMGGLMLEDNYPYDAKNEKC 200
>sp|Q9UBX1|CATF_HUMAN Cathepsin F precursor (CATSF)
Length = 484
Score = 153 bits (386), Expect = 7e-37
Identities = 84/173 (48%), Positives = 112/173 (64%), Gaps = 3/173 (1%)
Frame = +3
Query: 321 DGDIVSGSNFDLFKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLENGTAEYGVTQFS 500
D + S F F +N+ YE+ EE R+++F N+ R+ ++ L+ GTA+YGVT+FS
Sbjct: 178 DLPVKMASIFKNFVITYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRGTAQYGVTKFS 237
Query: 501 DLTEEEFTNQYLSPKYDLSKKP---QRIAQIPQDIRTGQAIDWRVLGAVTPVKNQGSCGS 671
DLTEEEF YL+ L K+P + A+ D+ + DWR GAVT VK+QG CGS
Sbjct: 238 DLTEEEFRTIYLNTL--LRKEPGNKMKQAKSVGDLAPPEW-DWRSKGAVTKVKDQGMCGS 294
Query: 672 CWAFSTTGNIEGQWFIRTKRLVSLSEQQLVDCDTVDEGCNGGLPSPSLQGYSA 830
CWAFS TGN+EGQWF+ L+SLSEQ+L+DCD +D+ C GGLPS YSA
Sbjct: 295 CWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGLPS---NAYSA 344
Score = 37.0 bits (84), Expect = 0.074
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 757 LLTVTQLTKDAMVVYLAQAYKVIQQMGGLETESDYPYKADRKTC 888
LL ++ K M + AY I+ +GGLETE DY Y+ ++C
Sbjct: 323 LLDCDKMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSC 366
>sp|P43295|A494_ARATH Probable cysteine proteinase A494 precursor
Length = 361
Score = 148 bits (373), Expect = 2e-35
Identities = 83/172 (48%), Positives = 108/172 (62%), Gaps = 11/172 (6%)
Frame = +3
Query: 336 SGSNFDLFKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLENGTAEYGVTQFSDLTEE 515
S +F LFKKKF KVY + EE R ++F N+ R+M + ++ +A +GVTQFSDLT
Sbjct: 44 SEDHFTLFKKKFGKVYGSIEEHYYRFSVFKANLLRAMRHQKMDP-SARHGVTQFSDLTRS 102
Query: 516 EFTNQYLSPK--YDLSKKPQRIAQIPQDIRTGQAIDWRVLGAVTPVKNQGSCGSCWAFST 689
EF ++L K + L K + +P + DWR GAVTPVKNQGSCGSCW+FST
Sbjct: 103 EFRRKHLGVKGGFKLPKDANQAPILPTQ-NLPEEFDWRDRGAVTPVKNQGSCGSCWSFST 161
Query: 690 TGNIEGQWFIRTKRLVSLSEQQLVDCD---------TVDEGCNGGLPSPSLQ 818
TG +EG F+ T +LVSLSEQQLVDCD + D GCNGGL + + +
Sbjct: 162 TGALEGAHFLATGKLVSLSEQQLVDCDHECDPEEEGSCDSGCNGGLMNSAFE 213
>sp|P14658|CYSP_TRYBB Cysteine proteinase precursor
Length = 450
Score = 147 bits (372), Expect = 3e-35
Identities = 77/154 (50%), Positives = 100/154 (64%), Gaps = 3/154 (1%)
Frame = +3
Query: 348 FDLFKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLENGTAEYGVTQFSDLTEEEFTN 527
F FKKK+ KVY++ +EE R F N++++ + N A +GVT FSD+T EEF
Sbjct: 41 FAAFKKKYGKVYKDAKEEAFRFRAFEENMEQAKIQA-AANPYATFGVTPFSDMTREEFRA 99
Query: 528 QYLSPKYDLSKKPQRIAQIPQDIRTGQA---IDWRVLGAVTPVKNQGSCGSCWAFSTTGN 698
+Y + + +R+ + ++ TG+A +DWR GAVTPVK QG CGSCWAFST GN
Sbjct: 100 RYRNGASYFAAAQKRLRKTV-NVTTGRAPAAVDWREKGAVTPVKVQGQCGSCWAFSTIGN 158
Query: 699 IEGQWFIRTKRLVSLSEQQLVDCDTVDEGCNGGL 800
IEGQW + LVSLSEQ LV CDT+D GCNGGL
Sbjct: 159 IEGQWQVAGNPLVSLSEQMLVSCDTIDSGCNGGL 192
>sp|P43296|RD19A_ARATH Cysteine proteinase RD19a precursor (RD19)
Length = 368
Score = 147 bits (372), Expect = 3e-35
Identities = 80/174 (45%), Positives = 111/174 (63%), Gaps = 11/174 (6%)
Frame = +3
Query: 330 IVSGSNFDLFKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLENGTAEYGVTQFSDLT 509
+ S +F LFK+KF KVY ++EE + R ++F N++R+ + L+ +A +GVTQFSDLT
Sbjct: 45 LTSEDHFSLFKRKFGKVYASNEEHDYRFSVFKANLRRARRHQKLDP-SATHGVTQFSDLT 103
Query: 510 EEEFTNQYLSPK--YDLSKKPQRIAQIPQDIRTGQAIDWRVLGAVTPVKNQGSCGSCWAF 683
EF ++L + + L K + +P + + DWR GAVTPVKNQGSCGSCW+F
Sbjct: 104 RSEFRKKHLGVRSGFKLPKDANKAPILPTE-NLPEDFDWRDHGAVTPVKNQGSCGSCWSF 162
Query: 684 STTGNIEGQWFIRTKRLVSLSEQQLVDC---------DTVDEGCNGGLPSPSLQ 818
S TG +EG F+ T +LVSLSEQQLVDC D+ D GCNGGL + + +
Sbjct: 163 SATGALEGANFLATGKLVSLSEQQLVDCDHECDPEEADSCDSGCNGGLMNSAFE 216
>sp|P25775|LMCPA_LEIME Cysteine proteinase A precursor
Length = 354
Score = 142 bits (359), Expect = 1e-33
Identities = 76/165 (46%), Positives = 99/165 (60%), Gaps = 4/165 (2%)
Frame = +3
Query: 318 PDGDIVSGSNFDLFKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLENGTAEYGVT-Q 494
P + V+ +++ FKK+ K + D EE R N F N++ + + +N A Y V+ +
Sbjct: 32 PVDNFVASAHYGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLN-TQNPHAHYDVSGK 90
Query: 495 FSDLTEEEFTNQYLSPKYDLS--KKPQRIAQIPQDIRTG-QAIDWRVLGAVTPVKNQGSC 665
F+DLT +EF YL+P Y K + + +G ++DWR GAVTPVKNQG C
Sbjct: 91 FADLTPQEFAKLYLNPDYYARHLKNHKEDVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLC 150
Query: 666 GSCWAFSTTGNIEGQWFIRTKRLVSLSEQQLVDCDTVDEGCNGGL 800
GSCWAFS GNIEGQW LVSLSEQ LV CD +DEGCNGGL
Sbjct: 151 GSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCDNIDEGCNGGL 195
>sp|P35591|CYSP1_LEIPI Cysteine proteinase 1 precursor (Amastigote cysteine proteinase
A-1)
Length = 354
Score = 142 bits (358), Expect = 1e-33
Identities = 76/165 (46%), Positives = 99/165 (60%), Gaps = 4/165 (2%)
Frame = +3
Query: 318 PDGDIVSGSNFDLFKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLENGTAEYGVT-Q 494
P + V+ +++ FKK+ K + D EE R N F N++ + + +N A Y V+ +
Sbjct: 32 PVDNFVASAHYGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLN-TQNPHAHYDVSGK 90
Query: 495 FSDLTEEEFTNQYLSPKYDLS--KKPQRIAQIPQDIRTG-QAIDWRVLGAVTPVKNQGSC 665
F+DLT +EF YL+P Y K + + +G ++DWR GAVTPVKNQG C
Sbjct: 91 FADLTPQEFAKLYLNPDYYARHLKDHKEDVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLC 150
Query: 666 GSCWAFSTTGNIEGQWFIRTKRLVSLSEQQLVDCDTVDEGCNGGL 800
GSCWAFS GNIEGQW LVSLSEQ LV CD +DEGCNGGL
Sbjct: 151 GSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCDNIDEGCNGGL 195
>sp|P25804|CYSP_PEA Cysteine proteinase 15A precursor (Turgor-responsive protein 15A)
Length = 363
Score = 139 bits (351), Expect = 8e-33
Identities = 79/163 (48%), Positives = 102/163 (62%), Gaps = 11/163 (6%)
Frame = +3
Query: 345 NFDLFKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLENGTAEYGVTQFSDLTEEEFT 524
+F FK KF+K Y EE + R +F +N+ ++ + + + TAE+G+T+FSDLT EF
Sbjct: 47 HFTSFKSKFSKSYATKEEHDYRFGVFKSNLIKAKLHQN-RDPTAEHGITKFSDLTASEFR 105
Query: 525 NQYLSPKYDLSKKPQRIAQIPQDIRTG--QAIDWRVLGAVTPVKNQGSCGSCWAFSTTGN 698
Q+L K L + P + P T + DWR GAVTPVK+QGSCGSCWAFSTTG
Sbjct: 106 RQFLGLKKRL-RLPAHAQKAPILPTTNLPEDFDWREKGAVTPVKDQGSCGSCWAFSTTGA 164
Query: 699 IEGQWFIRTKRLVSLSEQQLVDCDTV---------DEGCNGGL 800
+EG ++ T +LVSLSEQQLVDCD V D GCNGGL
Sbjct: 165 LEGAHYLATGKLVSLSEQQLVDCDHVCDPEQAGSCDSGCNGGL 207
>sp|Q05094|CYSP2_LEIPI Cysteine proteinase 2 precursor (Amastigote cysteine proteinase
A-2)
Length = 444
Score = 139 bits (350), Expect = 1e-32
Identities = 71/156 (45%), Positives = 99/156 (63%), Gaps = 5/156 (3%)
Frame = +3
Query: 348 FDLFKKKFNKVYENDEEEEKRINLFHTNIKRSMVMRFLENGTAEYGVTQFSDLTEEEFTN 527
F+ FK+ + + YE EE++R+ F N++ M N A++G+T+F DL+E EF
Sbjct: 38 FEEFKRTYGRAYETLAEEQQRLANFERNLEL-MREHQARNPHAQFGITKFFDLSEAEFAA 96
Query: 528 QYLSPKYDLSKKPQRIAQIPQDIRTG-----QAIDWRVLGAVTPVKNQGSCGSCWAFSTT 692
+YL+ + + AQ + R A+DWR GAVTPVK+QG+CGSCWAFS
Sbjct: 97 RYLNGAAYFAAAKRHAAQHYRKARADLSAVPDAVDWREKGAVTPVKDQGACGSCWAFSAV 156
Query: 693 GNIEGQWFIRTKRLVSLSEQQLVDCDTVDEGCNGGL 800
GNIEGQW++ LVSLSEQQLV CD +++GC+GGL
Sbjct: 157 GNIEGQWYLAGHELVSLSEQQLVSCDDMNDGCDGGL 192
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,904,947
Number of Sequences: 369166
Number of extensions: 1836956
Number of successful extensions: 5647
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5475
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)