Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_O22
(700 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79385|MFGM_PIG Lactadherin (Milk fat globule-EGF factor... 30 4.7
sp|P29030|CHIT_BRUMA Endochitinase precursor (MF1 antigen) 30 6.1
sp|Q56998|UVRB_ZYMMO UvrABC system protein B (UvrB protein)... 30 6.1
sp|Q8CNL1|LEU2_STAES 3-isopropylmalate dehydratase large su... 30 8.0
sp|Q5HMF7|LEU2_STAEQ 3-isopropylmalate dehydratase large su... 30 8.0
>sp|P79385|MFGM_PIG Lactadherin (Milk fat globule-EGF factor 8) (MFG-E8) (MFGM) (Sperm
surface protein SP47) (PP47)
Length = 409
Score = 30.4 bits (67), Expect = 4.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 186 AQTDMGISNNEFFCGSAIENNILTGNITNNSDKNGLSPT 302
A +D G+S E+ A+E I GN+ NNS K + T
Sbjct: 344 AYSDDGVSWTEYRDQGALEGKIFPGNLDNNSHKKNMFET 382
>sp|P29030|CHIT_BRUMA Endochitinase precursor (MF1 antigen)
Length = 504
Score = 30.0 bits (66), Expect = 6.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 191 LCIFFIIISNTLTIFPRYLINIYFWN 114
L +FFII+SNT+T+ Y+ Y+ N
Sbjct: 6 LILFFIILSNTITVIHGYVRGCYYTN 31
>sp|Q56998|UVRB_ZYMMO UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B)
Length = 740
Score = 30.0 bits (66), Expect = 6.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 306 QEIEIQTQFDIE*KVATGWCSGRNRY 383
Q +E +T+FD+E ATG CSG Y
Sbjct: 314 QRLEERTEFDLEMMAATGACSGIENY 339
>sp|Q8CNL1|LEU2_STAES 3-isopropylmalate dehydratase large subunit (Isopropylmalate
isomerase) (Alpha-IPM isomerase) (IPMI)
Length = 456
Score = 29.6 bits (65), Expect = 8.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 488 GANFISVYPSESKLAIHKSDTQDIRQVLGLHSGPKRPDISLGWIF 622
G +F + +P I ++ Q +GLH G K DI LG++F
Sbjct: 293 GVSFSNPFPE-----IKNANDQRAYDYMGLHPGQKAEDIKLGYVF 332
>sp|Q5HMF7|LEU2_STAEQ 3-isopropylmalate dehydratase large subunit (Isopropylmalate
isomerase) (Alpha-IPM isomerase) (IPMI)
Length = 456
Score = 29.6 bits (65), Expect = 8.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 488 GANFISVYPSESKLAIHKSDTQDIRQVLGLHSGPKRPDISLGWIF 622
G +F + +P I ++ Q +GLH G K DI LG++F
Sbjct: 293 GVSFSNPFPE-----IKNANDQRAYDYMGLHPGQKAEDIKLGYVF 332
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,253,135
Number of Sequences: 369166
Number of extensions: 1502418
Number of successful extensions: 3525
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3523
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6073541875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)