Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_O19
(818 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24643|CALX_CANFA Calnexin precursor (pp90) 170 4e-42
sp|P35565|CALX_RAT Calnexin precursor 170 5e-42
sp|P35564|CALX_MOUSE Calnexin precursor 170 5e-42
sp|Q5R440|CALX_PONPY Calnexin precursor 169 1e-41
sp|P27824|CALX_HUMAN Calnexin precursor (Major histocompati... 168 2e-41
sp|P29402|CALX1_ARATH Calnexin homolog 1 precursor 139 9e-33
sp|O14967|CLGN_HUMAN Calmegin precursor 137 5e-32
sp|Q39817|CALX_SOYBN Calnexin homolog precursor 137 5e-32
sp|Q38798|CALX2_ARATH Calnexin homolog 2 precursor 135 2e-31
sp|P52194|CLGN_MOUSE Calmegin precursor (MEG 1 antigen) (Ca... 134 2e-31
>sp|P24643|CALX_CANFA Calnexin precursor (pp90)
Length = 593
Score = 170 bits (431), Expect = 4e-42
Identities = 78/169 (46%), Positives = 102/169 (60%)
Frame = +3
Query: 9 EAPRIDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFED 188
EAP+I NP C+ APGCG W+ P I NPNYKG W PMIDNP Y+G+WK R+I N D+FED
Sbjct: 352 EAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFED 411
Query: 189 AQPYKMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETWVVKKDAERRADPNSQ 368
+P+KMTP AIGLELWSM+ +I FDNFI+ +++ DD+A + W +KK A+ A+P
Sbjct: 412 LEPFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDWANDGWGLKKAADGAAEP--- 468
Query: 369 SVVDAIREATSERXXXXXXXXXXXXXXXXXXXXYCCRNSGSDKSAEYER 515
VV + EA ER +CC EY++
Sbjct: 469 GVVGQMIEAAEERPWLWVVYVLTVALPVFLVILFCCSGKKQSSPVEYKK 517
>sp|P35565|CALX_RAT Calnexin precursor
Length = 591
Score = 170 bits (430), Expect = 5e-42
Identities = 78/169 (46%), Positives = 103/169 (60%)
Frame = +3
Query: 9 EAPRIDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFED 188
EAP+I NP C+ APGCG W+ P I NPNYKG W PMIDNP Y+G+WK R+I N D+FED
Sbjct: 352 EAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFED 411
Query: 189 AQPYKMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETWVVKKDAERRADPNSQ 368
+P++MTP AIGLELWSM+ +I FDNFII +++ DD+A + W +KK A+ A+P
Sbjct: 412 LEPFRMTPFSAIGLELWSMTSDIFFDNFIISGDRRVVDDWANDGWGLKKAADGAAEP--- 468
Query: 369 SVVDAIREATSERXXXXXXXXXXXXXXXXXXXXYCCRNSGSDKSAEYER 515
VV + EA ER +CC + EY++
Sbjct: 469 GVVGQMLEAAEERPWLWVVYILTVALPVFLVILFCCSGKKQSNAMEYKK 517
>sp|P35564|CALX_MOUSE Calnexin precursor
Length = 591
Score = 170 bits (430), Expect = 5e-42
Identities = 79/169 (46%), Positives = 103/169 (60%)
Frame = +3
Query: 9 EAPRIDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFED 188
EAP+I NP C+ APGCG W+ P I NPNYKG W PMIDNP Y+G+WK R+I N D+FED
Sbjct: 352 EAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFED 411
Query: 189 AQPYKMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETWVVKKDAERRADPNSQ 368
+P+KMTP AIGLELWSM+ +I FDNFII +++ DD+A + W +KK A+ A+P
Sbjct: 412 LEPFKMTPFSAIGLELWSMTSDIFFDNFIISGDRRVVDDWANDGWGLKKAADGAAEP--- 468
Query: 369 SVVDAIREATSERXXXXXXXXXXXXXXXXXXXXYCCRNSGSDKSAEYER 515
VV + EA ER +CC + EY++
Sbjct: 469 GVVLQMLEAAEERPWLWVVYILTVALPVFLVILFCCSGKKQSNAMEYKK 517
>sp|Q5R440|CALX_PONPY Calnexin precursor
Length = 592
Score = 169 bits (427), Expect = 1e-41
Identities = 78/169 (46%), Positives = 103/169 (60%)
Frame = +3
Query: 9 EAPRIDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFED 188
EAP+I NP C+ APGCG W+ P I NPNYKG W PMIDNP Y+G+WK R+I N D+FED
Sbjct: 351 EAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPSYQGIWKPRKIPNPDFFED 410
Query: 189 AQPYKMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETWVVKKDAERRADPNSQ 368
+P++MTP AIGLELWSM+ +I FDNFII +++ DD+A + W +KK A+ A+P
Sbjct: 411 LEPFRMTPFSAIGLELWSMTSDIFFDNFIICADRRIVDDWANDGWGLKKAADGAAEP--- 467
Query: 369 SVVDAIREATSERXXXXXXXXXXXXXXXXXXXXYCCRNSGSDKSAEYER 515
VV + EA ER +CC + EY++
Sbjct: 468 GVVGQMIEAAEERPWLWVVYILTVALPVFLVILFCCSGKKQTSAMEYKK 516
>sp|P27824|CALX_HUMAN Calnexin precursor (Major histocompatibility complex class I
antigen-binding protein p88) (p90) (IP90)
Length = 592
Score = 168 bits (425), Expect = 2e-41
Identities = 78/169 (46%), Positives = 102/169 (60%)
Frame = +3
Query: 9 EAPRIDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFED 188
EAP+I NP C+ APGCG W+ P I NPNYKG W PMIDNP Y+G+WK R+I N D+FED
Sbjct: 351 EAPQIANPRCESAPGCGVWQRPVIDNPNYKGKWKPPMIDNPSYQGIWKPRKIPNPDFFED 410
Query: 189 AQPYKMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETWVVKKDAERRADPNSQ 368
+P++MTP AIGLELWSM+ +I FDNFII +++ DD+A + W +KK A+ A+P
Sbjct: 411 LEPFRMTPFSAIGLELWSMTSDIFFDNFIICADRRIVDDWANDGWGLKKAADGAAEP--- 467
Query: 369 SVVDAIREATSERXXXXXXXXXXXXXXXXXXXXYCCRNSGSDKSAEYER 515
VV + EA ER +CC EY++
Sbjct: 468 GVVGQMIEAAEERPWLWVVYILTVALPVFLVILFCCSGKKQTSGMEYKK 516
>sp|P29402|CALX1_ARATH Calnexin homolog 1 precursor
Length = 530
Score = 139 bits (350), Expect = 9e-33
Identities = 63/130 (48%), Positives = 86/130 (66%), Gaps = 3/130 (2%)
Frame = +3
Query: 9 EAPRIDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFED 188
EAP+IDNP C+ APGCG WK P +NP YKG W++P+IDNP YKG+WK R I N DYFE
Sbjct: 298 EAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWSSPLIDNPAYKGIWKPRDIPNPDYFEL 357
Query: 189 AQPYKMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETWVVKKDAER---RADP 359
+P PI AIG+E+W+M D I+FDN +I ++K A+ + TW K D E+ +A+
Sbjct: 358 DRP-DYEPIAAIGIEIWTMQDGILFDNILIAKDEKVAETYRQTTWKPKFDVEKEKQKAEE 416
Query: 360 NSQSVVDAIR 389
+ D ++
Sbjct: 417 EAAGSADGLK 426
>sp|O14967|CLGN_HUMAN Calmegin precursor
Length = 610
Score = 137 bits (344), Expect = 5e-32
Identities = 59/105 (56%), Positives = 74/105 (70%)
Frame = +3
Query: 9 EAPRIDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFED 188
EAP+I NP C+ GCG WK P I NP YKGVW P++DNP Y+G+W R+I N DYFED
Sbjct: 342 EAPQILNPACRI--GCGEWKPPMIDNPKYKGVWRPPLVDNPNYQGIWSPRKIPNPDYFED 399
Query: 189 AQPYKMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETW 323
P+ +T A+GLELWSM+ +I FDNFII K+ AD +AA+ W
Sbjct: 400 DHPFLLTSFSALGLELWSMTSDIYFDNFIICSEKEVADHWAADGW 444
>sp|Q39817|CALX_SOYBN Calnexin homolog precursor
Length = 546
Score = 137 bits (344), Expect = 5e-32
Identities = 60/113 (53%), Positives = 78/113 (69%)
Frame = +3
Query: 9 EAPRIDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFED 188
EAP+I+NP C+ APGCG WK P +NP YKG W+AP IDNP YKG+WK R I N +YFE
Sbjct: 307 EAPKIENPKCEAAPGCGEWKRPTKRNPAYKGKWSAPYIDNPSYKGIWKpreIPNPEYFEL 366
Query: 189 AQPYKMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETWVVKKDAER 347
A+P PI AIG+E+W+M D I+FDN +I ++ K A+ + TW K E+
Sbjct: 367 AKP-DFEPIAAIGIEIWTMQDGILFDNVLIANDDKVAESYRETTWKPKFTVEK 418
>sp|Q38798|CALX2_ARATH Calnexin homolog 2 precursor
Length = 532
Score = 135 bits (339), Expect = 2e-31
Identities = 60/130 (46%), Positives = 85/130 (65%), Gaps = 3/130 (2%)
Frame = +3
Query: 9 EAPRIDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFED 188
EAP++ N C+ APGCG WK P +NP YKG W++P+IDNP YKG+WK R I N DYFE
Sbjct: 300 EAPKVSNTKCEAAPGCGEWKRPMKRNPAYKGKWSSPLIDNPAYKGIWKPRDIPNPDYFEL 359
Query: 189 AQPYKMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETWVVKKDAER---RADP 359
+P + PI AIG+E+W+M D I+FDN +I ++K A+ + TW K D E+ +A+
Sbjct: 360 ERP-NLEPIAAIGIEIWTMQDGILFDNILISKDEKVAETYRQSTWKPKFDVEKEKQKAED 418
Query: 360 NSQSVVDAIR 389
+ D ++
Sbjct: 419 EAAGEADGLK 428
>sp|P52194|CLGN_MOUSE Calmegin precursor (MEG 1 antigen) (Calnexin-T) (A2/6)
Length = 611
Score = 134 bits (338), Expect = 2e-31
Identities = 64/133 (48%), Positives = 83/133 (62%)
Frame = +3
Query: 9 EAPRIDNPLCKDAPGCGPWKSPKIKNPNYKGVWTAPMIDNPKYKGVWKARRIANADYFED 188
EAP I NP C+ GCG WK P I NP YKG+W PMI+NP Y+G+W ++I N DYFED
Sbjct: 342 EAPHIPNPACQI--GCGEWKPPMIDNPKYKGIWRPPMINNPNYQGLWSPQKIPNPDYFED 399
Query: 189 AQPYKMTPIGAIGLELWSMSDEIVFDNFIIVDNKKAADDFAAETWVVKKDAERRADPNSQ 368
P+ +T A+GLELWSM+ +I FDNFII K+ AD +A + W +K A+ N
Sbjct: 400 DHPFLLTSFSALGLELWSMTPDIYFDNFIICSEKEVADQWATDGWELKIMV---ANANEP 456
Query: 369 SVVDAIREATSER 407
V+ + A ER
Sbjct: 457 GVLRQLVIAAEER 469
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,171,939
Number of Sequences: 369166
Number of extensions: 1676163
Number of successful extensions: 4537
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4436
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7859674995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)