Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_O07
(434 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 239 2e-63
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 238 3e-63
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 238 3e-63
sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alp... 238 3e-63
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 238 5e-63
sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha) 236 1e-62
sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha) 236 2e-62
sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)... 236 2e-62
sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha)... 235 3e-62
sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha) 234 8e-62
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 239 bits (609), Expect = 2e-63
Identities = 109/129 (84%), Positives = 122/129 (94%)
Frame = +2
Query: 41 APGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVG 220
APGHRDFIKNMITGTSQADCAVL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVG
Sbjct: 92 APGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVG 151
Query: 221 VNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWY 400
VNKMDSTEPP+S KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S+NMPW+
Sbjct: 152 VNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSSNMPWF 211
Query: 401 KGWEITRKN 427
KGW++TRK+
Sbjct: 212 KGWKVTRKD 220
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 238 bits (608), Expect = 3e-63
Identities = 109/129 (84%), Positives = 121/129 (93%)
Frame = +2
Query: 41 APGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVG 220
APGHRDFIKNMITGTSQADCAVL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVG
Sbjct: 92 APGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVG 151
Query: 221 VNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWY 400
VNKMDSTEPP+S KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+
Sbjct: 152 VNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWF 211
Query: 401 KGWEITRKN 427
KGW++TRK+
Sbjct: 212 KGWKVTRKD 220
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 238 bits (608), Expect = 3e-63
Identities = 109/129 (84%), Positives = 121/129 (93%)
Frame = +2
Query: 41 APGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVG 220
APGHRDFIKNMITGTSQADCAVL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVG
Sbjct: 92 APGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVG 151
Query: 221 VNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWY 400
VNKMDSTEPP+S KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+
Sbjct: 152 VNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWF 211
Query: 401 KGWEITRKN 427
KGW++TRK+
Sbjct: 212 KGWKVTRKD 220
>sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 238 bits (608), Expect = 3e-63
Identities = 109/129 (84%), Positives = 121/129 (93%)
Frame = +2
Query: 41 APGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVG 220
APGHRDFIKNMITGTSQADCAVL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVG
Sbjct: 92 APGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVG 151
Query: 221 VNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWY 400
VNKMDSTEPP+S KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+
Sbjct: 152 VNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWF 211
Query: 401 KGWEITRKN 427
KGW++TRK+
Sbjct: 212 KGWKVTRKD 220
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 238 bits (606), Expect = 5e-63
Identities = 109/128 (85%), Positives = 120/128 (93%)
Frame = +2
Query: 41 APGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVG 220
APGHRDFIKNMITGTSQADCAVL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVG
Sbjct: 92 APGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVG 151
Query: 221 VNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWY 400
+NKMDSTEPP+S KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+
Sbjct: 152 INKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSPNMPWF 211
Query: 401 KGWEITRK 424
KGW+ITRK
Sbjct: 212 KGWKITRK 219
>sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 236 bits (603), Expect = 1e-62
Identities = 109/131 (83%), Positives = 122/131 (93%)
Frame = +2
Query: 41 APGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVG 220
APGHRDFIKNMITGTSQADCAVL+VAAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVG
Sbjct: 92 APGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVG 151
Query: 221 VNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWY 400
VNKMDSTEPP+S+ RFEEIKKEV SY+KK+GY P AVAFVPISGW+GDNM+E ST MPW+
Sbjct: 152 VNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 211
Query: 401 KGWEITRKNAQ 433
KGW++ RK +
Sbjct: 212 KGWQVERKEGK 222
>sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 236 bits (602), Expect = 2e-62
Identities = 109/131 (83%), Positives = 121/131 (92%)
Frame = +2
Query: 41 APGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVG 220
APGHRDFIKNMITGTSQADCAVL+VAAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVG
Sbjct: 78 APGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVG 137
Query: 221 VNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWY 400
VNKMDSTEPP+S+ RFEEIKKEV SY+KK+GY P AVAFVPISGW+GDNM+E ST MPW+
Sbjct: 138 VNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWF 197
Query: 401 KGWEITRKNAQ 433
KGW + RK +
Sbjct: 198 KGWNVERKEGK 208
>sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)
sp|P84315|EF1A_HELVI Elongation factor 1-alpha (EF-1-alpha)
sp|P84318|EF1A_HELGL Elongation factor 1-alpha (EF-1-alpha)
sp|P84320|EF1A_HELDI Elongation factor 1-alpha (EF-1-alpha)
sp|P84317|EF1A_HELAM Elongation factor 1-alpha (EF-1-alpha)
sp|P84319|EF1A_HELAL Elongation factor 1-alpha (EF-1-alpha)
sp|P84322|EF1A_ANIIF Elongation factor 1-alpha (EF-1-alpha)
sp|P84321|EF1A_ADIBE Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 236 bits (602), Expect = 2e-62
Identities = 109/131 (83%), Positives = 121/131 (92%)
Frame = +2
Query: 41 APGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVG 220
APGHRDFIKNMITGTSQADCAVL+VAAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVG
Sbjct: 78 APGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVG 137
Query: 221 VNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWY 400
VNKMDSTEPP+S+ RFEEIKKEV SY+KK+GY P AVAFVPISGW+GDNM+E ST MPW+
Sbjct: 138 VNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWF 197
Query: 401 KGWEITRKNAQ 433
KGW + RK +
Sbjct: 198 KGWNVERKEGK 208
>sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha) (50 kDa female-specific
protein)
Length = 463
Score = 235 bits (600), Expect = 3e-62
Identities = 108/128 (84%), Positives = 122/128 (95%)
Frame = +2
Query: 41 APGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVG 220
APGHRDFIKNMITGTSQADCAVL+VAAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVG
Sbjct: 92 APGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVG 151
Query: 221 VNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWY 400
VNKMDS+EPP+S+ R+EEIKKEV SY+KK+GY P AVAFVPISGW+GDNM+E STNMPW+
Sbjct: 152 VNKMDSSEPPYSEARYEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTNMPWF 211
Query: 401 KGWEITRK 424
KGW++ RK
Sbjct: 212 KGWKVERK 219
>sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 234 bits (596), Expect = 8e-62
Identities = 109/131 (83%), Positives = 119/131 (90%)
Frame = +2
Query: 41 APGHRDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVG 220
APGHRDFIKNMITGTSQADCAVL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVG
Sbjct: 92 APGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVG 151
Query: 221 VNKMDSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWY 400
VNKMDSTEPPFS+ RFEEIKKEV +Y+KK+GY P AVAFVPISGW+GDNM+E S +PWY
Sbjct: 152 VNKMDSTEPPFSEARFEEIKKEVSAYIKKIGYNPAAVAFVPISGWHGDNMLEASDRLPWY 211
Query: 401 KGWEITRKNAQ 433
KGW I RK +
Sbjct: 212 KGWNIERKEGK 222
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,479,809
Number of Sequences: 369166
Number of extensions: 870769
Number of successful extensions: 3888
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3548
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)