Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_N24
(382 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z7W2|Y592_CHLPN Hypothetical UPF0161 protein CPn0592/C... 31 0.77
sp|Q74ZJ5|SEN54_ASHGO tRNA-splicing endonuclease subunit SE... 31 0.77
sp|Q01815|CAC1C_MOUSE Voltage-dependent L-type calcium chan... 30 1.7
sp|P22002|CAC1C_RAT Voltage-dependent L-type calcium channe... 30 1.7
sp|P15381|CAC1C_RABIT Voltage-dependent L-type calcium chan... 30 1.7
sp|Q13936|CAC1C_HUMAN Voltage-dependent L-type calcium chan... 30 1.7
sp|Q9V6K3|ROR2_DROME Tyrosine-protein kinase transmembrane ... 28 5.0
sp|O43490|PROM1_HUMAN Prominin-1 precursor (Prominin-like p... 28 5.0
sp|Q07969|CD36_RAT Platelet glycoprotein IV (GPIV) (GPIIIB)... 28 6.5
sp|P45919|YQBC_BACSU Hypothetical protein yqbC 28 6.5
>sp|Q9Z7W2|Y592_CHLPN Hypothetical UPF0161 protein CPn0592/CP0156/CPj0592/CpB0617
Length = 103
Score = 31.2 bits (69), Expect = 0.77
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 9 STNELNKHEESHPGSVAMTITTTVIINEEPYQTADAGNSSH 131
S + K HPG + M T + EPYQ D G+SSH
Sbjct: 60 SIKRIGKCGPWHPGGIDMVPKTALQEVLEPYQEIDGGDSSH 100
>sp|Q74ZJ5|SEN54_ASHGO tRNA-splicing endonuclease subunit SEN54 (tRNA-intron endonuclease
SEN54)
Length = 455
Score = 31.2 bits (69), Expect = 0.77
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = -2
Query: 267 LRCWSHFPANFFVPPLHRQLEPDRYCYCPRRLHKYSCSDLPQLIDYDLNFRHLPFDTVPH 88
+ W P N F PL+ L LH+Y+ S PQL Y+ +H+PF VPH
Sbjct: 217 IHSWLKTPQNLFHVPLYHPLH--------FLLHRYTSS--PQL--YEELSQHIPFKKVPH 264
>sp|Q01815|CAC1C_MOUSE Voltage-dependent L-type calcium channel alpha-1C subunit
(Voltage-gated calcium channel alpha subunit Cav1.2)
(Calcium channel, L type, alpha-1 polypeptide, isoform
1, cardiac muscle) (Mouse brain class C) (MBC) (MELC-CC)
Length = 2139
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/67 (32%), Positives = 29/67 (43%)
Frame = -3
Query: 218 IANWNLIDIVIVLVVFTNTVALICLN*LIMT*ISGICRLIRFLIDDNRCCNCHSNGSRVR 39
I W +I+I+L +F N VAL I F DD+ N SN RV
Sbjct: 120 IVEWKPFEIIILLTIFANCVALAI--------------YIPFPEDDSNATN--SNLERVE 163
Query: 38 FLVLVQF 18
+L L+ F
Sbjct: 164 YLFLIIF 170
>sp|P22002|CAC1C_RAT Voltage-dependent L-type calcium channel alpha-1C subunit
(Voltage-gated calcium channel alpha subunit Cav1.2)
(Calcium channel, L type, alpha-1 polypeptide, isoform
1, cardiac muscle) (RAT brain class C) (RBC)
Length = 2169
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/67 (32%), Positives = 29/67 (43%)
Frame = -3
Query: 218 IANWNLIDIVIVLVVFTNTVALICLN*LIMT*ISGICRLIRFLIDDNRCCNCHSNGSRVR 39
I W +I+I+L +F N VAL I F DD+ N SN RV
Sbjct: 150 IVEWKPFEIIILLTIFANCVALAI--------------YIPFPEDDSNATN--SNLERVE 193
Query: 38 FLVLVQF 18
+L L+ F
Sbjct: 194 YLFLIIF 200
>sp|P15381|CAC1C_RABIT Voltage-dependent L-type calcium channel alpha-1C subunit
(Voltage-gated calcium channel alpha subunit Cav1.2)
(Calcium channel, L type, alpha-1 polypeptide, isoform
1, cardiac muscle) (Smooth muscle calcium channel
blocker receptor) (CACB-receptor)
Length = 2171
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/67 (32%), Positives = 29/67 (43%)
Frame = -3
Query: 218 IANWNLIDIVIVLVVFTNTVALICLN*LIMT*ISGICRLIRFLIDDNRCCNCHSNGSRVR 39
I W +I+I+L +F N VAL I F DD+ N SN RV
Sbjct: 150 IVEWKPFEIIILLTIFANCVALAI--------------YIPFPEDDSNATN--SNLERVE 193
Query: 38 FLVLVQF 18
+L L+ F
Sbjct: 194 YLFLIIF 200
>sp|Q13936|CAC1C_HUMAN Voltage-dependent L-type calcium channel alpha-1C subunit
(Voltage-gated calcium channel alpha subunit Cav1.2)
(Calcium channel, L type, alpha-1 polypeptide, isoform
1, cardiac muscle)
Length = 2221
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/67 (32%), Positives = 29/67 (43%)
Frame = -3
Query: 218 IANWNLIDIVIVLVVFTNTVALICLN*LIMT*ISGICRLIRFLIDDNRCCNCHSNGSRVR 39
I W +I+I+L +F N VAL I F DD+ N SN RV
Sbjct: 120 IVEWKPFEIIILLTIFANCVALAI--------------YIPFPEDDSNATN--SNLERVE 163
Query: 38 FLVLVQF 18
+L L+ F
Sbjct: 164 YLFLIIF 170
>sp|Q9V6K3|ROR2_DROME Tyrosine-protein kinase transmembrane receptor Ror2 precursor
(Neurospecific receptor tyrosine kinase)
Length = 724
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -2
Query: 273 PCLRCWSHFPANFFVPPL--HRQLEPDRYC 190
PC R + +P F PPL H+ LE + YC
Sbjct: 239 PCQRWDTQYPHKHFQPPLVFHQLLEGENYC 268
>sp|O43490|PROM1_HUMAN Prominin-1 precursor (Prominin-like protein 1) (Antigen AC133)
(CD133 antigen)
Length = 865
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 299 TTRGHRFVVPVYGVGHIFLQISLSHRFIANWNLIDIVIVLVVF-TNTVALIC 147
TTRG V G +FL + + F+ W L+ IV++ VF N LIC
Sbjct: 470 TTRGC-----VSNTGGVFLMVGVGLSFLFCWILMIIVVLTFVFGANVEKLIC 516
>sp|Q07969|CD36_RAT Platelet glycoprotein IV (GPIV) (GPIIIB) (CD36 antigen) (PAS IV)
(PAS-4 protein) (Fatty acid transport protein) (Fatty
acid translocase) (Adipocyte membrane protein)
Length = 472
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 246 PANFFVPPLHRQLEPDRYCYCPRRLHKYSCS 154
PAN F PL PD +C+C ++ +C+
Sbjct: 296 PANAFASPLQN---PDNHCFCTEKVISNNCT 323
>sp|P45919|YQBC_BACSU Hypothetical protein yqbC
Length = 217
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 216 DEAVGQRNLQENVTNTVNRDDESVPSSCEKESNS-IDEETGEH 341
D+ + + + Q N N DD+++ S ESNS I EET H
Sbjct: 53 DQKLDKISFQLNKENQYGTDDQNLKDSLNLESNSEITEETHSH 95
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,522,459
Number of Sequences: 369166
Number of extensions: 809026
Number of successful extensions: 2415
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2414
length of database: 68,354,980
effective HSP length: 93
effective length of database: 51,174,625
effective search space used: 1688762625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)