Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_N19
(479 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab... 67 3e-11
sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (R... 67 3e-11
sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta (Rab... 67 3e-11
sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (R... 66 5e-11
sp|O97556|GDIB_CANFA Rab GDP dissociation inhibitor beta (R... 66 5e-11
sp|P50397|GDIB_BOVIN Rab GDP dissociation inhibitor beta (R... 65 6e-11
sp|Q5RCE1|GDIB_PONPY Rab GDP dissociation inhibitor beta (R... 65 1e-10
sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (... 64 2e-10
sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (... 64 2e-10
sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Ra... 64 2e-10
>sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 66.6 bits (161), Expect = 3e-11
Identities = 27/43 (62%), Positives = 37/43 (86%)
Frame = +2
Query: 5 ESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 133
+S++F+S +YDATTHFETTC D+ D+YKR TGSEFDF +++ K
Sbjct: 395 DSQIFISRAYDATTHFETTCDDIKDIYKRMTGSEFDFEEMKRK 437
>sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 66.6 bits (161), Expect = 3e-11
Identities = 27/43 (62%), Positives = 37/43 (86%)
Frame = +2
Query: 5 ESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 133
+S++F+S +YDATTHFETTC D+ D+YKR TGSEFDF +++ K
Sbjct: 395 DSQIFISRAYDATTHFETTCDDIKDIYKRMTGSEFDFEEMKRK 437
>sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 66.6 bits (161), Expect = 3e-11
Identities = 27/43 (62%), Positives = 37/43 (86%)
Frame = +2
Query: 5 ESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 133
+S++F+S +YDATTHFETTC D+ D+YKR TGSEFDF +++ K
Sbjct: 395 DSQIFISRTYDATTHFETTCGDIKDIYKRMTGSEFDFEEMKRK 437
>sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 65.9 bits (159), Expect = 5e-11
Identities = 27/43 (62%), Positives = 37/43 (86%)
Frame = +2
Query: 5 ESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 133
ES++F+S +YDATTHFETTC D+ ++YKR TGSEFDF +++ K
Sbjct: 395 ESQIFISRTYDATTHFETTCDDIKNIYKRMTGSEFDFEEMKRK 437
>sp|O97556|GDIB_CANFA Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 65.9 bits (159), Expect = 5e-11
Identities = 27/43 (62%), Positives = 37/43 (86%)
Frame = +2
Query: 5 ESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 133
ES++F+S +YDATTHFETTC D+ ++YKR TGSEFDF +++ K
Sbjct: 395 ESQIFISRTYDATTHFETTCDDIKNIYKRMTGSEFDFEEMKRK 437
>sp|P50397|GDIB_BOVIN Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 65.5 bits (158), Expect = 6e-11
Identities = 27/43 (62%), Positives = 36/43 (83%)
Frame = +2
Query: 5 ESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 133
ES++F+S +YDATTHFETTC D+ D+YKR GSEFDF +++ K
Sbjct: 395 ESQIFISRTYDATTHFETTCDDIKDIYKRMMGSEFDFEEMKRK 437
>sp|Q5RCE1|GDIB_PONPY Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 64.7 bits (156), Expect = 1e-10
Identities = 27/43 (62%), Positives = 36/43 (83%)
Frame = +2
Query: 5 ESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 133
ES +F+S +YDATTHFETTC D+ ++YKR TGSEFDF +++ K
Sbjct: 395 ESLIFISRTYDATTHFETTCDDIKNIYKRMTGSEFDFEEMKRK 437
>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 63.9 bits (154), Expect = 2e-10
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +2
Query: 5 ESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 133
ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 395 ESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (SMG p25A
GDI)
Length = 447
Score = 63.9 bits (154), Expect = 2e-10
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +2
Query: 5 ESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 133
ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 395 ESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 63.9 bits (154), Expect = 2e-10
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +2
Query: 5 ESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 133
ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 395 ESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,320,545
Number of Sequences: 369166
Number of extensions: 880811
Number of successful extensions: 2627
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2625
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2822184570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)