Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_N08
(768 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13592|NCA12_HUMAN Neural cell adhesion molecule 1, 120 ... 39 0.020
sp|P13596|NCAM1_RAT Neural cell adhesion molecule 1, 140 kD... 39 0.020
sp|P13591|NCA11_HUMAN Neural cell adhesion molecule 1, 140 ... 39 0.020
sp|P31836|NCAM1_BOVIN Neural cell adhesion molecule 1, 140 ... 38 0.035
sp|P13590|NCAM1_CHICK Neural cell adhesion molecule 1, 180 ... 37 0.077
sp|P13595|NCA11_MOUSE Neural cell adhesion molecule 1, 180 ... 36 0.10
sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89... 35 0.22
sp|P13594|NCA12_MOUSE Neural cell adhesion molecule 1, 120 ... 35 0.29
sp|P16170|NCA11_XENLA Neural cell adhesion molecule 1-A pre... 33 0.65
sp|Q52ZX4|MATK_BANCU Maturase K (Intron maturase) 32 2.5
>sp|P13592|NCA12_HUMAN Neural cell adhesion molecule 1, 120 kDa isoform precursor (N-CAM
120) (NCAM-120) (CD56 antigen)
Length = 761
Score = 38.5 bits (88), Expect = 0.020
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 2/139 (1%)
Frame = +1
Query: 52 IYSHPRANIVWSINNEEVVSDSVN--KFYCDGTINYLELTRCTEIGKHNIRVVATNPLGQ 225
++++P A I W + + + S + + K Y + +YLE+T +E N A N +GQ
Sbjct: 428 VFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ 487
Query: 226 QSSECVLTVNSINNYAQDLKHIAPENPYKKMASLKKVEVTPELTTALHKPKATAEKIVKI 405
+S E +L + I PY A ++ E PE T + K AE
Sbjct: 488 ESLEFIL----VQADTPSSPSIDQVEPYSSTAQVQFDE--PEATGGVPILKYKAE----- 536
Query: 406 ERNVEVNARHAKTADIKEA 462
R V H+K D KEA
Sbjct: 537 WRAVGEEVWHSKWYDAKEA 555
>sp|P13596|NCAM1_RAT Neural cell adhesion molecule 1, 140 kDa isoform precursor (N-CAM
140) (NCAM-140)
Length = 858
Score = 38.5 bits (88), Expect = 0.020
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Frame = +1
Query: 52 IYSHPRANIVWSINNEEVVSDSVN--KFYCDGTINYLELTRCTEIGKHNIRVVATNPLGQ 225
++++P A I W + + + S + + K Y + +YLE+T +E N A N +GQ
Sbjct: 439 VFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ 498
Query: 226 QSSECVLTVNSINNYAQDLKHIAPENPYKKMASLKKVEVTPELTTALHKPKATAEKIVKI 405
+S E +L + I PY A ++ E PE T + K AE
Sbjct: 499 ESLEFIL----VQADTPSSPSIDRVEPYSSTAQVQFDE--PEATGGVPILKYKAE----- 547
Query: 406 ERNVEVNARHAKTADIKEA 462
+++ A H+K D KEA
Sbjct: 548 WKSLGEEAWHSKWYDAKEA 566
>sp|P13591|NCA11_HUMAN Neural cell adhesion molecule 1, 140 kDa isoform precursor (N-CAM
140) (NCAM-140) (CD56 antigen)
Length = 848
Score = 38.5 bits (88), Expect = 0.020
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 2/139 (1%)
Frame = +1
Query: 52 IYSHPRANIVWSINNEEVVSDSVN--KFYCDGTINYLELTRCTEIGKHNIRVVATNPLGQ 225
++++P A I W + + + S + + K Y + +YLE+T +E N A N +GQ
Sbjct: 428 VFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ 487
Query: 226 QSSECVLTVNSINNYAQDLKHIAPENPYKKMASLKKVEVTPELTTALHKPKATAEKIVKI 405
+S E +L + I PY A ++ E PE T + K AE
Sbjct: 488 ESLEFIL----VQADTPSSPSIDQVEPYSSTAQVQFDE--PEATGGVPILKYKAE----- 536
Query: 406 ERNVEVNARHAKTADIKEA 462
R V H+K D KEA
Sbjct: 537 WRAVGEEVWHSKWYDAKEA 555
>sp|P31836|NCAM1_BOVIN Neural cell adhesion molecule 1, 140 kDa isoform precursor (N-CAM
140) (NCAM-140)
Length = 853
Score = 37.7 bits (86), Expect = 0.035
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 2/139 (1%)
Frame = +1
Query: 52 IYSHPRANIVWSINNEEVVSDSVN--KFYCDGTINYLELTRCTEIGKHNIRVVATNPLGQ 225
++++P A I W + + + S + + K Y + +YLE+T +E N A N +GQ
Sbjct: 437 VFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ 496
Query: 226 QSSECVLTVNSINNYAQDLKHIAPENPYKKMASLKKVEVTPELTTALHKPKATAEKIVKI 405
+S E VL + I PY A ++ E PE T + K AE
Sbjct: 497 ESLEFVL----VQADTPSSPSIDQVEPYSSTAQVQFDE--PEATGGVPILKYKAE----- 545
Query: 406 ERNVEVNARHAKTADIKEA 462
R + H+K D KEA
Sbjct: 546 WRAMGEEVWHSKWYDAKEA 564
>sp|P13590|NCAM1_CHICK Neural cell adhesion molecule 1, 180 kDa isoform precursor (N-CAM
180)
Length = 1091
Score = 36.6 bits (83), Expect = 0.077
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 2/139 (1%)
Frame = +1
Query: 52 IYSHPRANIVWSINNEEVVSDSVN--KFYCDGTINYLELTRCTEIGKHNIRVVATNPLGQ 225
++++P A I W + + + S + + K Y + +YLE+T +E N A N +GQ
Sbjct: 428 VFAYPSAVISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ 487
Query: 226 QSSECVLTVNSINNYAQDLKHIAPENPYKKMASLKKVEVTPELTTALHKPKATAEKIVKI 405
+SSE +L + I PY A ++ E PE T + K AE
Sbjct: 488 ESSEFIL----VQADTPSSPSIDRVEPYSSTARVEFDE--PEATGGVPILKYKAE----- 536
Query: 406 ERNVEVNARHAKTADIKEA 462
R + H++ D KEA
Sbjct: 537 WRALGEGEWHSRLYDAKEA 555
>sp|P13595|NCA11_MOUSE Neural cell adhesion molecule 1, 180 kDa isoform precursor (N-CAM
180) (NCAM-180)
Length = 1115
Score = 36.2 bits (82), Expect = 0.10
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 2/139 (1%)
Frame = +1
Query: 52 IYSHPRANIVWSINNEEVVSDSVN--KFYCDGTINYLELTRCTEIGKHNIRVVATNPLGQ 225
++++P A I W + + + S + + K Y + +YLE+T +E N A N +GQ
Sbjct: 429 VFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ 488
Query: 226 QSSECVLTVNSINNYAQDLKHIAPENPYKKMASLKKVEVTPELTTALHKPKATAEKIVKI 405
+S E +L + I PY A ++ E PE T + K AE
Sbjct: 489 ESLEFIL----VQADTPSSPSIDRVEPYSSTAQVQFDE--PEATGGVPILKYKAE----- 537
Query: 406 ERNVEVNARHAKTADIKEA 462
+++ + H K D KEA
Sbjct: 538 WKSLGEESWHFKWYDAKEA 556
>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 (Uncoordinated protein 89)
Length = 8081
Score = 35.0 bits (79), Expect = 0.22
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Frame = +1
Query: 37 KFIINIYSHPRANIVWSINNEEVVSD-SVNKFYCDGTINYLELTRCTEIGKHNIRVVATN 213
KF N+ +P ++ W++N E V ++ DG + +E++ T + ATN
Sbjct: 2385 KFTANVEGYPEPSVAWTLNGEPVSKHPNITVTDKDGE-HTIEISAVTPEQAGELSCEATN 2443
Query: 214 PLGQQSSECVLTVNSINN---YAQDLK-HIAPENPYKKM-ASLKKVEVTPELTTALHKPK 378
P+G + + L V + + +A++L+ + E M A L V+ P++T +
Sbjct: 2444 PVGSKKRDVQLAVKKVGDAPTFAKNLEDRLITEGELTLMDAKLNIVKPKPKITWLKDGVE 2503
Query: 379 ATAEKIVKI 405
T++ KI
Sbjct: 2504 ITSDGHYKI 2512
Score = 31.6 bits (70), Expect = 2.5
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 40 FIINIYSHPRANIVWSINNEEVV-SDSVNKFYCDGTINY-LELTRCTEIGKHNIRVVATN 213
F + + P+ + W + EE+ SD V DG+I ++ + + G+ IR VATN
Sbjct: 1063 FEVRVEGEPKPTVTWYLKGEELKQSDRVEIREFDGSIKISIKNIKIEDAGE--IRAVATN 1120
Query: 214 PLGQQSSECVLTV 252
G ++ LTV
Sbjct: 1121 SEGSDETKAKLTV 1133
Score = 30.4 bits (67), Expect = 5.5
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +1
Query: 19 MKEMHSKFIINIYSHPRANIVWSINNEEVVSDSVNKFYCDGTINY---LELTRCTEIGKH 189
++E +K + + +P +I W ++ ++ D + FY D + ++ + T+ G++
Sbjct: 560 LQESSAKMCLKVTGYPLPDITWYKDDVQLHEDERHTFYSDEDGFFAMTIDPVQVTDTGRY 619
Query: 190 NIRVVATNPLGQQSSECVLTVNSINNYA 273
+ATN GQ S+ V + A
Sbjct: 620 T--CMATNEYGQASTSAFFRVLKVEKEA 645
Score = 30.4 bits (67), Expect = 5.5
Identities = 29/128 (22%), Positives = 52/128 (40%)
Frame = +1
Query: 37 KFIINIYSHPRANIVWSINNEEVVSDSVNKFYCDGTINYLELTRCTEIGKHNIRVVATNP 216
KF + P N+ W +NN++++ K + Y+ E GK +IR+ P
Sbjct: 2287 KFSAIVTGKPMPNVTWYLNNKKLIQSEEVK------VKYVH-----ETGKTSIRI--QKP 2333
Query: 217 LGQQSSECVLTVNSINNYAQDLKHIAPENPYKKMASLKKVEVTPELTTALHKPKATAEKI 396
L + + + +++ Q + + KK EV P+ TT + + +
Sbjct: 2334 LMEHNGTIRVEAENVSGKVQATAQLKVD---------KKTEV-PKFTTNMDDRQVKEGED 2383
Query: 397 VKIERNVE 420
VK NVE
Sbjct: 2384 VKFTANVE 2391
>sp|P13594|NCA12_MOUSE Neural cell adhesion molecule 1, 120 kDa isoform precursor (N-CAM
120) (NCAM-120)
Length = 725
Score = 34.7 bits (78), Expect = 0.29
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +1
Query: 52 IYSHPRANIVWSINNEEVVSDSVN--KFYCDGTINYLELTRCTEIGKHNIRVVATNPLGQ 225
++++P A I W + + + S + + K Y + +YLE+T +E N A N +GQ
Sbjct: 429 VFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ 488
Query: 226 QSSECVL 246
+S E +L
Sbjct: 489 ESLEFIL 495
>sp|P16170|NCA11_XENLA Neural cell adhesion molecule 1-A precursor
Length = 1088
Score = 33.5 bits (75), Expect = 0.65
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +1
Query: 52 IYSHPRANIVWSINNEEVVSDSVN--KFYCDGTINYLELTRCTEIGKHNIRVVATNPLGQ 225
+++HPRA + W + + + S + + K Y T + LE+ +E N A N +G
Sbjct: 422 VFAHPRAAVTWFRDGQLLPSSNFSNIKIYSGPTSSSLEVNPDSENDFGNYNCTAINTIGH 481
Query: 226 QSSECVL 246
+ SE +L
Sbjct: 482 EFSEFIL 488
>sp|Q52ZX4|MATK_BANCU Maturase K (Intron maturase)
Length = 509
Score = 31.6 bits (70), Expect = 2.5
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = -2
Query: 701 LNRKSVLKKCFDSSIHKIKFRLTVVEAYHRFPYAH---IPHSI*PPLVVEAFSNHLVSSP 531
L K ++K C SIH I L + + Y IPH I P ++V+AF + P
Sbjct: 119 LEGKELVKSCNLRSIHSIFSFLE--DKFSHLNYVSDILIPHPIHPEILVQAFRVWVQDVP 176
Query: 530 VFFLLKYSLY 501
LL++ LY
Sbjct: 177 SLHLLRFFLY 186
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,898,390
Number of Sequences: 369166
Number of extensions: 1496055
Number of successful extensions: 4444
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4431
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)