Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_N05
(615 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UHB9|SRP68_HUMAN Signal recognition particle 68 kDa pr... 70 6e-12
sp|Q00004|SRP68_CANFA Signal recognition particle 68 kDa pr... 67 4e-11
sp|Q8BMA6|SRP68_MOUSE Signal recognition particle 68 kDa pr... 66 6e-11
sp|Q9VSS2|SRP68_DROME Probable signal recognition particle ... 63 5e-10
sp|Q20822|SRP68_CAEEL Probable signal recognition particle ... 54 3e-07
sp|Q9EZE7|ESPC_ECO27 Serine protease espC precursor (EPEC-s... 33 0.58
sp|P38687|SRP68_YEAST Signal recognition particle 68 kDa pr... 31 2.9
sp|P29511|TBA6_ARATH Tubulin alpha-6 chain 31 2.9
sp|Q8VSL2|SEPA_SHIFL Serine protease sepA precursor 30 3.8
sp|P50798|VL2_HPV24 Minor capsid protein L2 30 3.8
>sp|Q9UHB9|SRP68_HUMAN Signal recognition particle 68 kDa protein (SRP68)
Length = 627
Score = 69.7 bits (169), Expect = 6e-12
Identities = 43/127 (33%), Positives = 65/127 (51%)
Frame = +1
Query: 43 SVKEMMEKINSLIESISADQLICRADRCLSMIDDASIENCPASENIELPLAKRLDEFVED 222
S+K++ + + LI + +++ +A L D E + PL +R + F D
Sbjct: 506 SLKDLPD-VQELITQVRSEKCSLQAAAILDANDAHQTETSSSQVKDNKPLVERFETFCLD 564
Query: 223 PYLSKKTSSQSTGRLIQTCPEFEPIPVKPVFFDLAFYHVKFPSLEDKIKDRRGRAADSKG 402
P L K ++ L+ P F+PIP KP+FFDLA HV FP LEDK++ + G
Sbjct: 565 PSLVTKQAN-----LVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQK-----TKSG 614
Query: 403 LTGMVKG 423
LTG +KG
Sbjct: 615 LTGYIKG 621
>sp|Q00004|SRP68_CANFA Signal recognition particle 68 kDa protein (SRP68)
Length = 622
Score = 67.0 bits (162), Expect = 4e-11
Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 8/126 (6%)
Frame = +1
Query: 70 NSLIESISADQLIC--RADRC---LSMIDDASIENCPASENI---ELPLAKRLDEFVEDP 225
NSL + +LI R+++C + I DAS + P + + PL +R + F DP
Sbjct: 501 NSLKDLPDVQELITQVRSEKCSLQAAAILDASDSHQPETSSQVKDNKPLVERFETFCLDP 560
Query: 226 YLSKKTSSQSTGRLIQTCPEFEPIPVKPVFFDLAFYHVKFPSLEDKIKDRRGRAADSKGL 405
L K ++ L+ P F+PIP KP+FFDLA HV FP LEDK++ + GL
Sbjct: 561 SLVTKQAN-----LVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQK-----TKSGL 610
Query: 406 TGMVKG 423
TG +KG
Sbjct: 611 TGYIKG 616
>sp|Q8BMA6|SRP68_MOUSE Signal recognition particle 68 kDa protein (SRP68)
Length = 625
Score = 66.2 bits (160), Expect = 6e-11
Identities = 46/128 (35%), Positives = 67/128 (52%)
Frame = +1
Query: 40 PSVKEMMEKINSLIESISADQLICRADRCLSMIDDASIENCPASENIELPLAKRLDEFVE 219
P V+E++ ++ S S+ A ++ D S D S + +N PL +R + F
Sbjct: 510 PDVQELITQVRSEKCSLQAAAILDAND---SHQTDTSYQ---VKDNT--PLVERFESFCL 561
Query: 220 DPYLSKKTSSQSTGRLIQTCPEFEPIPVKPVFFDLAFYHVKFPSLEDKIKDRRGRAADSK 399
DP L K ++ L+ P F+PIP KP+FFDLA HV FP LEDK++ +
Sbjct: 562 DPSLVTKQAN-----LVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQK-----TKS 611
Query: 400 GLTGMVKG 423
GLTG +KG
Sbjct: 612 GLTGYIKG 619
>sp|Q9VSS2|SRP68_DROME Probable signal recognition particle 68 kDa protein (SRP68)
Length = 604
Score = 63.2 bits (152), Expect = 5e-10
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Frame = +1
Query: 52 EMMEKINSLIESISADQLICRADRCLSMIDDASIEN--CPASENIELPLAKRLDEFVEDP 225
++ E++ ++ +I + A L DD S E+ S+ PL +RL + ED
Sbjct: 479 QLQEELKKVVSAIDGCKFSAHAYSVLE--DDNSEESGTTTKSQKTTKPLYERLSLYKEDQ 536
Query: 226 YLSKKTSSQSTGRLIQTCPEFEPIPVKPVFFDLAFYHVKFPSLEDKIKDRRGRAADSKGL 405
L K + + + P+ EPIP KP+FFDLA +V+ PSLE K++ + A +
Sbjct: 537 SLHTKAPN-----VFKLTPDMEPIPCKPIFFDLAMTYVELPSLEGKLESPGKKGA---SI 588
Query: 406 TGMVKGWI-WG 435
TG VKG++ WG
Sbjct: 589 TGFVKGFLGWG 599
>sp|Q20822|SRP68_CAEEL Probable signal recognition particle 68 kDa protein (SRP68)
Length = 622
Score = 53.9 bits (128), Expect = 3e-07
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 32/160 (20%)
Frame = +1
Query: 52 EMMEKINSLIESISADQLICRADRCLSMIDDASIENCPASENIELPLAKRLDEF----VE 219
E +N L + + ++ RA R S D ++ A + PL + ++E+ V
Sbjct: 466 ETQSSLNELRSEVESAKVTVRAARLASAAGDVKTDSELAKIIDKRPLLETVNEWRQWDVR 525
Query: 220 DPYLSKKTSSQSTGRLIQTCPEFEPIPVKPVFFDLAFYHVKFPSLEDKI----KDR---- 375
+ KKT ++ P F P+P KP+FFDLA +H+ P+++D++ KDR
Sbjct: 526 NSLKDKKTIPVAS-----LPPAFIPMPNKPIFFDLANFHLTMPNVDDRLEKLQKDRDATP 580
Query: 376 ----RGRAA-------------DSKGLTGMVKGW---IWG 435
+G +A + +GLTGM+ GW WG
Sbjct: 581 KKAAKGSSAAAASSKTSNQEEEEQQGLTGMLSGWKKSFWG 620
>sp|Q9EZE7|ESPC_ECO27 Serine protease espC precursor (EPEC-secreted protein C)
Length = 1305
Score = 33.1 bits (74), Expect = 0.58
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = -2
Query: 257 VDCEDVFFDRYGSSTNSSNRLASGNSIFSDAGQFSIDASSIIDKQRSARQINWSALMLSM 78
V ++ FDR GS NSS L G + + G FS A +D + +A I
Sbjct: 732 VTSQNAVFDRVGSFVNSSLTLEKGAKLTAQGGIFSTGA---VDVKENASLILTGTPSAQK 788
Query: 77 RELIFSIISLTDG 39
+E +IS T+G
Sbjct: 789 QEYYSPVISTTEG 801
>sp|P38687|SRP68_YEAST Signal recognition particle 68 kDa protein homolog (SRP68)
Length = 599
Score = 30.8 bits (68), Expect = 2.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 280 PEFEPIPVKPVFFDLAFYHVKFPSLEDKIKDRRGRAADSKGLT 408
P+ PIP KP FDLAF ++ + E + +++ ++
Sbjct: 532 PKMLPIPSKPTLFDLAFNYITYDKQEPSASQVKDSVTETESIS 574
>sp|P29511|TBA6_ARATH Tubulin alpha-6 chain
Length = 450
Score = 30.8 bits (68), Expect = 2.9
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Frame = +1
Query: 34 PGPSVK-EMMEKINSLIESISADQLICRADRCLSMIDDASIENCPASENIELPLAKRLDE 210
P P V ++E NS++ S L+ D + + ++A + C S NIE P L+
Sbjct: 173 PSPQVSTSVVEPYNSVL---STHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLNR 229
Query: 211 FVEDPYLSKKTSSQSTGRLIQTCPEFEP--IPVKPVFFDLAFY 333
V S S + G L EF+ +P + F L+ Y
Sbjct: 230 LVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSY 272
>sp|Q8VSL2|SEPA_SHIFL Serine protease sepA precursor
Length = 1364
Score = 30.4 bits (67), Expect = 3.8
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = -2
Query: 257 VDCEDVFFDRYGSSTNSSNRLASGNSIFSDAGQFSIDASSIIDKQRSARQINWSALMLSM 78
V ++ FDR GS NSS L G + + +G FS A +D + +A + + + +
Sbjct: 788 VTSQNAVFDRVGSFVNSSLTLGKGAKLTAQSGIFSTGA---VDVKENA-SLTLTGMPSAQ 843
Query: 77 RELIFS-IISLTDG 39
++ +S +IS T+G
Sbjct: 844 KQGYYSPVISTTEG 857
>sp|P50798|VL2_HPV24 Minor capsid protein L2
Length = 523
Score = 30.4 bits (67), Expect = 3.8
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Frame = +1
Query: 142 DASIENCPASENIELPLAKRLDEFVEDPYLSKKTSSQSTGRLI---------QTCPEFEP 294
D +IE P +E +EL + + D L + T S +L+ T P FE
Sbjct: 399 DTNIEENPLAEQMELEIDTYPEAHSFDALLDEATDDFSGSQLVIGNRRSTTSYTVPRFES 458
Query: 295 IPVKPVFF--DLAFYHVKFPSLEDKIK 369
P ++ DL Y+V +P DKI+
Sbjct: 459 -PRNSSYYVQDLQGYYVAYPESRDKIE 484
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,975,527
Number of Sequences: 369166
Number of extensions: 1309285
Number of successful extensions: 4512
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4510
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)