Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_N04
(428 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P43024|CX6A1_MOUSE Cytochrome c oxidase polypeptide VIa-... 32 0.56
sp|Q45479|LSPA_BACSU Lipoprotein signal peptidase (Prolipop... 30 2.1
sp|P32799|COX13_YEAST Cytochrome c oxidase polypeptide VIa,... 28 6.2
sp|P52590|NU107_RAT Nuclear pore complex protein Nup107 (Nu... 28 8.1
sp|Q8KA32|Y080_BUCAP Hypothetical protein BUsg080 28 8.1
>sp|P43024|CX6A1_MOUSE Cytochrome c oxidase polypeptide VIa-liver, mitochondrial precursor
Length = 111
Score = 32.0 bits (71), Expect = 0.56
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +1
Query: 7 NTGFNANYRTGKMWFYLT-FLTFPIIGVFHYIAXXXXXXXXXXXXXXXPPVPKYEWCKTY 183
++G + + +MW LT F+ P +GV + PP Y +
Sbjct: 27 SSGAHGEEGSARMWKALTYFVALPGVGV----SMLNVFLKSRHEEHERPPFVAYPHLRIR 82
Query: 184 T-PFPWGDGQKPLFEH 228
T PFPWGDG LF +
Sbjct: 83 TKPFPWGDGNHTLFHN 98
>sp|Q45479|LSPA_BACSU Lipoprotein signal peptidase (Prolipoprotein signal peptidase)
(Signal peptidase II) (SPase II)
Length = 154
Score = 30.0 bits (66), Expect = 2.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 7 NTGFNANYRTGKMWFYLTFLTFPIIGVFHYI 99
NTG G+MWF+ T IIG+ +YI
Sbjct: 45 NTGAAWGILAGQMWFFYLITTAVIIGIVYYI 75
>sp|P32799|COX13_YEAST Cytochrome c oxidase polypeptide VIa, mitochondrial precursor
Length = 129
Score = 28.5 bits (62), Expect = 6.2
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 7/30 (23%)
Frame = +1
Query: 154 VPKYEWCKTYT-------PFPWGDGQKPLF 222
VP EW + Y PF WGDG K LF
Sbjct: 87 VPDSEWPRDYEFMNIRSKPFFWGDGDKTLF 116
>sp|P52590|NU107_RAT Nuclear pore complex protein Nup107 (Nucleoporin Nup107) (107 kDa
nucleoporin) (p105)
Length = 926
Score = 28.1 bits (61), Expect = 8.1
Identities = 22/98 (22%), Positives = 47/98 (47%)
Frame = -2
Query: 424 YRTFY*KNEHQLTLFQLETIS*LIQGKKYTIF*ILSNSIQCAHVAHVpreLSIFFQYLFF 245
+RT + + ++++ L+T L+ +K+T ++ + H+P++L++ LF
Sbjct: 558 FRTLGLQTKEEVSIEVLKTYIQLLINEKHT-------NLIAFYTCHLPQDLAVAQYALFL 610
Query: 244 *NHRKCAQKGASVHLPKEKACKFYTIHI*VLEDPQYHD 131
+C Q+ + L KE TI V+E+ + D
Sbjct: 611 EGVTECEQRHQCLELAKEADLDVATITKTVVENIRKKD 648
>sp|Q8KA32|Y080_BUCAP Hypothetical protein BUsg080
Length = 968
Score = 28.1 bits (61), Expect = 8.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 354 YKAKSTLFFKS*VTLFSVLMWLMCPVSFQYFFNISSF 244
Y +KS +F S F +L +L + F+YFFN +++
Sbjct: 7 YLSKSLIFIFS--LFFLILFFLESSIGFKYFFNFTNY 41
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,767,702
Number of Sequences: 369166
Number of extensions: 975924
Number of successful extensions: 2137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2137
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2095022160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)