Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_N01
(519 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CPV7|ZDHC6_MOUSE Probable palmitoyltransferase ZDHHC6 ... 55 1e-07
sp|Q9H6R6|ZDHC6_HUMAN Probable palmitoyltransferase ZDHHC6 ... 48 2e-05
sp|Q98936|PTPRG_CHICK Receptor-type tyrosine-protein phosph... 29 7.7
>sp|Q9CPV7|ZDHC6_MOUSE Probable palmitoyltransferase ZDHHC6 (Zinc finger DHHC
domain-containing protein 6) (DHHC-6) (H4 homolog)
Length = 413
Score = 54.7 bits (130), Expect = 1e-07
Identities = 33/120 (27%), Positives = 55/120 (45%)
Frame = +1
Query: 4 SQNYEIRRSYNGGLFPVISFGCRVVYGSPCTDENRLPVKPGQIVMVTRWRKHWLYGQILX 183
S Y++ YNG P ++ G R + SPCT+E R+ ++ G+ ++ TR ++WLYG +
Sbjct: 315 SVRYKVIEDYNGACCP-LNRGVRTFFTSPCTEEPRIRLQKGEFILATRGLRYWLYGDKI- 372
Query: 184 XXXXXXXXXXXXXXXVESSQQRRVATKRANSRGWFPAVCARQKYLGGEDGPAVPQKADRN 363
+E + + RGWFP C + G+ PA P+ +N
Sbjct: 373 ----------LDDSFIEGT---------SRVRGWFPRNCVEKCPCDGDSDPA-PEGEKKN 412
>sp|Q9H6R6|ZDHC6_HUMAN Probable palmitoyltransferase ZDHHC6 (Zinc finger DHHC
domain-containing protein 6) (DHHC-6) (Zinc finger
protein 376) (Transmembrane protein H4)
sp|Q5REH2|ZDHC6_PONPY Probable palmitoyltransferase ZDHHC6 (Zinc finger DHHC
domain-containing protein 6) (DHHC-6)
Length = 413
Score = 47.8 bits (112), Expect = 2e-05
Identities = 27/102 (26%), Positives = 48/102 (47%)
Frame = +1
Query: 4 SQNYEIRRSYNGGLFPVISFGCRVVYGSPCTDENRLPVKPGQIVMVTRWRKHWLYGQILX 183
S Y++ Y+G P ++ G + + SPCT+E R+ ++ G+ ++ TR ++WLYG +
Sbjct: 315 SVRYKVIEDYSGACCP-LNKGIKTFFTSPCTEEPRIQLQKGEFILATRGLRYWLYGDKI- 372
Query: 184 XXXXXXXXXXXXXXXVESSQQRRVATKRANSRGWFPAVCARQ 309
++ S V + RGWFP C +
Sbjct: 373 ---------------LDDSFIEGV----SRIRGWFPRKCVEK 395
>sp|Q98936|PTPRG_CHICK Receptor-type tyrosine-protein phosphatase gamma precursor
(Protein-tyrosine phosphatase gamma) (R-PTP-gamma)
Length = 1422
Score = 28.9 bits (63), Expect = 7.7
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +2
Query: 272 TVEDGSQPCALDRNISVVKTDQRSPRRPIETVI 370
T E+G+ P LD+N +V+ +D+ P +E+++
Sbjct: 1390 TKENGNGPMTLDKNGAVMASDESDPAESMESLV 1422
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,794,794
Number of Sequences: 369166
Number of extensions: 1229070
Number of successful extensions: 3550
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3549
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)