Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_M23
(515 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6A068|CDC5L_MOUSE Cell division cycle 5-related protein... 144 2e-34
sp|O08837|CDC5L_RAT Cell division cycle 5-related protein (... 144 2e-34
sp|Q99459|CDC5L_HUMAN Cell division cycle 5-like protein (C... 140 1e-33
sp|Q5K9L1|CEF1_CRYNE Pre-mRNA splicing factor CEF1 124 1e-28
sp|Q4WHG0|CEF1_ASPFU Pre-mRNA splicing factor cef1 122 7e-28
sp|Q5AW35|CEF1_EMENI Pre-mRNA splicing factor CEF1 122 7e-28
sp|Q4P652|CEF1_USTMA Pre-mRNA splicing factor CEF1 120 2e-27
sp|Q6C8F5|CEF1_YARLI Pre-mRNA splicing factor CEF1 118 7e-27
sp|Q52G60|CEF1_MAGGR Pre-mRNA splicing factor CEF1 117 2e-26
sp|Q7SAF6|CEF1_NEUCR Pre-mRNA splicing factor cef-1 117 2e-26
>sp|Q6A068|CDC5L_MOUSE Cell division cycle 5-related protein (Cdc5-like protein)
Length = 802
Score = 144 bits (362), Expect = 2e-34
Identities = 77/144 (53%), Positives = 104/144 (72%), Gaps = 3/144 (2%)
Frame = +3
Query: 3 QCVQQYSHLIDLTR---SAKEGLSEFDTLRPDDNDLRPESRPAKPDPIDMAEDEIDMLNE 173
QC++ Y L+D T + +E + L+P + D PE++PA+PDPIDM EDE++ML+E
Sbjct: 95 QCLEHYEFLLDKTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSE 154
Query: 174 ARARLANTQGKKAKRKGRERQLIMARRLAAVQQKRELAEVGIIGRNISNKKRVGVNYSEE 353
ARARLANTQGKKAKRK RE+QL ARRLAA+Q++REL GI + KKR GV+Y+ E
Sbjct: 155 ARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKKKR-GVDYNAE 213
Query: 354 IPFYQPIPKGFHDTSQEHYEATDS 425
IPF + GF+DTS+E+Y+A D+
Sbjct: 214 IPFEKKPALGFYDTSEENYQALDA 237
>sp|O08837|CDC5L_RAT Cell division cycle 5-related protein (Cdc5-like protein) (Pombe
Cdc5-related protein)
Length = 802
Score = 144 bits (362), Expect = 2e-34
Identities = 77/144 (53%), Positives = 104/144 (72%), Gaps = 3/144 (2%)
Frame = +3
Query: 3 QCVQQYSHLIDLTR---SAKEGLSEFDTLRPDDNDLRPESRPAKPDPIDMAEDEIDMLNE 173
QC++ Y L+D T + +E + L+P + D PE++PA+PDPIDM EDE++ML+E
Sbjct: 95 QCLEHYEFLLDKTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSE 154
Query: 174 ARARLANTQGKKAKRKGRERQLIMARRLAAVQQKRELAEVGIIGRNISNKKRVGVNYSEE 353
ARARLANTQGKKAKRK RE+QL ARRLAA+Q++REL GI + KKR GV+Y+ E
Sbjct: 155 ARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKKKR-GVDYNAE 213
Query: 354 IPFYQPIPKGFHDTSQEHYEATDS 425
IPF + GF+DTS+E+Y+A D+
Sbjct: 214 IPFEKKPALGFYDTSEENYQALDA 237
>sp|Q99459|CDC5L_HUMAN Cell division cycle 5-like protein (Cdc5-like protein) (Pombe
cdc5-related protein)
Length = 802
Score = 140 bits (354), Expect = 1e-33
Identities = 75/144 (52%), Positives = 103/144 (71%), Gaps = 3/144 (2%)
Frame = +3
Query: 3 QCVQQYSHLIDLTR---SAKEGLSEFDTLRPDDNDLRPESRPAKPDPIDMAEDEIDMLNE 173
QC++ Y L+D + +E + L+P + D PE++PA+PDPIDM EDE++ML+E
Sbjct: 95 QCLEHYEFLLDKAAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSE 154
Query: 174 ARARLANTQGKKAKRKGRERQLIMARRLAAVQQKRELAEVGIIGRNISNKKRVGVNYSEE 353
ARARLANTQGKKAKRK RE+QL ARRLAA+Q++REL GI + +KR GV+Y+ E
Sbjct: 155 ARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKR-GVDYNAE 213
Query: 354 IPFYQPIPKGFHDTSQEHYEATDS 425
IPF + GF+DTS+E+Y+A D+
Sbjct: 214 IPFEKKPALGFYDTSEENYQALDA 237
>sp|Q5K9L1|CEF1_CRYNE Pre-mRNA splicing factor CEF1
Length = 838
Score = 124 bits (311), Expect = 1e-28
Identities = 72/158 (45%), Positives = 100/158 (63%), Gaps = 14/158 (8%)
Frame = +3
Query: 3 QCVQQYSHLIDLTRSAKE-----GLSEFDT---------LRPDDNDLRPESRPAKPDPID 140
QC+++Y L+D + G E ++ LRP + D PE+RPA+PDPID
Sbjct: 94 QCLERYQKLLDDAEARDNEELGLGAGEDESSKPATDARGLRPGEIDTDPETRPARPDPID 153
Query: 141 MAEDEIDMLNEARARLANTQGKKAKRKGRERQLIMARRLAAVQQKRELAEVGIIGRNISN 320
M +DE +ML+EARARLANTQGKKAKRK RERQL ARRLA +Q+KREL GI R +
Sbjct: 154 MDDDEKEMLSEARARLANTQGKKAKRKARERQLEEARRLAFLQKKRELKAAGINLR--AK 211
Query: 321 KKRVGVNYSEEIPFYQPIPKGFHDTSQEHYEATDSVIG 434
K+ G++Y+ +IPF + GF+D ++E + + +G
Sbjct: 212 PKKKGMDYNADIPFEKQPAPGFYDVTEEQAKVHAAPVG 249
>sp|Q4WHG0|CEF1_ASPFU Pre-mRNA splicing factor cef1
Length = 792
Score = 122 bits (305), Expect = 7e-28
Identities = 67/150 (44%), Positives = 94/150 (62%), Gaps = 16/150 (10%)
Frame = +3
Query: 3 QCVQQYSHLIDLTRS----------------AKEGLSEFDTLRPDDNDLRPESRPAKPDP 134
QC+++Y L+D + A + LRP + D PES+PA+PD
Sbjct: 93 QCLERYQKLLDEAEARENDELGLGGPSGGEAAAPSADDVRRLRPGELDPDPESKPARPDT 152
Query: 135 IDMAEDEIDMLNEARARLANTQGKKAKRKGRERQLIMARRLAAVQQKRELAEVGIIGRNI 314
ID+ EDE +ML+EARARLANTQGKKAKRK RERQL +RRLA +Q++REL G I +
Sbjct: 153 IDLDEDEKEMLSEARARLANTQGKKAKRKARERQLEESRRLAVLQKRRELKNAG-INIKV 211
Query: 315 SNKKRVGVNYSEEIPFYQPIPKGFHDTSQE 404
+K+ ++Y+ +IPF +P GF+DT++E
Sbjct: 212 VTRKKGEMDYNADIPFEKPAAPGFYDTTEE 241
>sp|Q5AW35|CEF1_EMENI Pre-mRNA splicing factor CEF1
Length = 791
Score = 122 bits (305), Expect = 7e-28
Identities = 68/149 (45%), Positives = 94/149 (63%), Gaps = 15/149 (10%)
Frame = +3
Query: 3 QCVQQYSHLIDL---------------TRSAKEGLSEFDTLRPDDNDLRPESRPAKPDPI 137
QC+++Y L+D T ++ + LRP + D PES+PA+PD I
Sbjct: 93 QCLERYQKLLDEAEARENDELGLGGPGTEASAPSADDVRRLRPGELDPDPESKPARPDTI 152
Query: 138 DMAEDEIDMLNEARARLANTQGKKAKRKGRERQLIMARRLAAVQQKRELAEVGIIGRNIS 317
D+ EDE +ML+EARARLANTQGKKAKRK RERQL +RRLA +Q++REL G I I
Sbjct: 153 DLDEDEKEMLSEARARLANTQGKKAKRKARERQLEESRRLAVLQKRRELKNAG-INIKIV 211
Query: 318 NKKRVGVNYSEEIPFYQPIPKGFHDTSQE 404
+K ++Y+ +IPF +P GF+DT++E
Sbjct: 212 TRKPGEMDYNADIPFEKPAAPGFYDTTEE 240
>sp|Q4P652|CEF1_USTMA Pre-mRNA splicing factor CEF1
Length = 820
Score = 120 bits (300), Expect = 2e-27
Identities = 72/162 (44%), Positives = 97/162 (59%), Gaps = 18/162 (11%)
Frame = +3
Query: 6 CVQQYSHLIDL-----------------TRSAKEGLSEFDTLRPDDNDLRPESRPAKPDP 134
C+++Y L+D T A + LRP + D PE++PA+PDP
Sbjct: 96 CLERYQKLLDQAEAQDNQATSSSLGLIGTGEAVPSADDVRRLRPGEIDPDPETKPARPDP 155
Query: 135 IDMAEDEIDMLNEARARLANTQGKKAKRKGRERQLIMARRLAAVQQKRELAEVGIIGRNI 314
IDM EDE +ML+EARARLANTQGKKAKRK RER L +RRLA +Q++REL GI I
Sbjct: 156 IDMDEDEKEMLSEARARLANTQGKKAKRKARERALEQSRRLAMLQKRRELKAAGI---TI 212
Query: 315 SNKKRVG-VNYSEEIPFYQPIPKGFHDTSQEHYEATDSVIGK 437
K + G V+Y+ ++PF + GF+DTS E ++ + IGK
Sbjct: 213 KQKPKKGSVDYNADVPFEKKPLPGFYDTSAETSKSYKAPIGK 254
>sp|Q6C8F5|CEF1_YARLI Pre-mRNA splicing factor CEF1
Length = 719
Score = 118 bits (296), Expect = 7e-27
Identities = 64/139 (46%), Positives = 92/139 (66%), Gaps = 2/139 (1%)
Frame = +3
Query: 3 QCVQQYSHLIDLTRSAKEG--LSEFDTLRPDDNDLRPESRPAKPDPIDMAEDEIDMLNEA 176
QC+Q+Y L+ EG S + + D PE++PA+PD +DM EDE +ML+EA
Sbjct: 93 QCIQRYERLLAEVAGEVEGEDASAVASAPATEGDQFPETKPARPDAVDMDEDEKEMLSEA 152
Query: 177 RARLANTQGKKAKRKGRERQLIMARRLAAVQQKRELAEVGIIGRNISNKKRVGVNYSEEI 356
RARLANTQGKKAKRK RER L +RRL+ +Q++REL GI R +S +K+ ++Y+ +I
Sbjct: 153 RARLANTQGKKAKRKDRERMLEDSRRLSQLQKRRELKNAGIDTR-LSKRKKNEMDYNADI 211
Query: 357 PFYQPIPKGFHDTSQEHYE 413
PF +GF+ T++E +E
Sbjct: 212 PFEHKPARGFYSTAEEEHE 230
>sp|Q52G60|CEF1_MAGGR Pre-mRNA splicing factor CEF1
Length = 773
Score = 117 bits (292), Expect = 2e-26
Identities = 68/149 (45%), Positives = 95/149 (63%), Gaps = 15/149 (10%)
Frame = +3
Query: 3 QCVQQYSHLID------------LTRSAKEGLSEFDT---LRPDDNDLRPESRPAKPDPI 137
QC+++Y L+D LT + + D+ LRP + D PE++PAK D +
Sbjct: 93 QCLERYQKLLDEAEQKEAAAALGLTGTGEASAPTADSVRRLRPGEIDPDPETKPAKADTV 152
Query: 138 DMAEDEIDMLNEARARLANTQGKKAKRKGRERQLIMARRLAAVQQKRELAEVGIIGRNIS 317
D+ EDE +ML+EARARLANTQGKKAKRK RERQ +RRLAA+Q++REL G I ++
Sbjct: 153 DLDEDEKEMLSEARARLANTQGKKAKRKARERQQEESRRLAALQKRRELKTAG-INVKVT 211
Query: 318 NKKRVGVNYSEEIPFYQPIPKGFHDTSQE 404
+K ++Y+ +IPF Q GF+DTS+E
Sbjct: 212 TRKPGQMDYNADIPFEQKPAPGFYDTSEE 240
>sp|Q7SAF6|CEF1_NEUCR Pre-mRNA splicing factor cef-1
Length = 779
Score = 117 bits (292), Expect = 2e-26
Identities = 68/150 (45%), Positives = 96/150 (64%), Gaps = 16/150 (10%)
Frame = +3
Query: 3 QCVQQYSHLIDLTRSAKE---GLSEFD-------------TLRPDDNDLRPESRPAKPDP 134
QC+++Y L+D + GL+ D LRP + D PE++PA+PD
Sbjct: 93 QCLERYQRLLDEAEQREASALGLTGPDGGEAHAPSADDVRKLRPGEVDPDPETKPARPDT 152
Query: 135 IDMAEDEIDMLNEARARLANTQGKKAKRKGRERQLIMARRLAAVQQKRELAEVGIIGRNI 314
ID+ EDE +ML+EARARLANTQGKKAKRK RERQ +RRLAA+Q++REL G I +
Sbjct: 153 IDLDEDEKEMLSEARARLANTQGKKAKRKARERQQEESRRLAALQKRRELKTAG-INIKV 211
Query: 315 SNKKRVGVNYSEEIPFYQPIPKGFHDTSQE 404
+ KK+ ++Y+ +IPF + GF+DT++E
Sbjct: 212 TTKKQGQMDYNADIPFEKKPVPGFYDTTEE 241
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,859,339
Number of Sequences: 369166
Number of extensions: 731373
Number of successful extensions: 2709
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2680
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3354254700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)