Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_M20
(746 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 445 e-125
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 444 e-124
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 444 e-124
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 444 e-124
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 443 e-124
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 442 e-124
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 442 e-124
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 442 e-124
sp|P52273|TBA_BOMMO Tubulin alpha chain 441 e-123
sp|P02550|TBA_PIG Tubulin alpha chain 441 e-123
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 445 bits (1145), Expect = e-125
Identities = 213/214 (99%), Positives = 214/214 (100%)
Frame = +3
Query: 3 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 182
HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ
Sbjct: 197 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 256
Query: 183 TNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC 362
TNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC
Sbjct: 257 TNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC 316
Query: 363 MLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 542
MLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC
Sbjct: 317 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 376
Query: 543 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 644
MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 377 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 444 bits (1142), Expect = e-124
Identities = 212/214 (99%), Positives = 214/214 (100%)
Frame = +3
Query: 3 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 182
HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ
Sbjct: 197 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 256
Query: 183 TNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC 362
TNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC
Sbjct: 257 TNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC 316
Query: 363 MLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 542
+LYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC
Sbjct: 317 LLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 376
Query: 543 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 644
MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 377 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 444 bits (1142), Expect = e-124
Identities = 212/214 (99%), Positives = 214/214 (100%)
Frame = +3
Query: 3 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 182
HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ
Sbjct: 158 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 217
Query: 183 TNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC 362
TNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC
Sbjct: 218 TNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC 277
Query: 363 MLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 542
+LYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC
Sbjct: 278 LLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 337
Query: 543 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 644
MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 338 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 371
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 444 bits (1141), Expect = e-124
Identities = 212/214 (99%), Positives = 213/214 (99%)
Frame = +3
Query: 3 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 182
HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ
Sbjct: 197 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 256
Query: 183 TNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC 362
TNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC
Sbjct: 257 TNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC 316
Query: 363 MLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 542
MLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC
Sbjct: 317 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 376
Query: 543 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 644
MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 377 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 443 bits (1139), Expect = e-124
Identities = 211/214 (98%), Positives = 214/214 (100%)
Frame = +3
Query: 3 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 182
HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ
Sbjct: 197 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 256
Query: 183 TNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC 362
TNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPANQMVKCDPRHGKYM+CC
Sbjct: 257 TNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCC 316
Query: 363 MLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 542
MLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC
Sbjct: 317 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 376
Query: 543 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 644
MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 377 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 442 bits (1138), Expect = e-124
Identities = 211/214 (98%), Positives = 214/214 (100%)
Frame = +3
Query: 3 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 182
HSDCAFMVDNEAIYDICRRNLDIERP+YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ
Sbjct: 197 HSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 256
Query: 183 TNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC 362
TNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ+VKCDPRHGKYMACC
Sbjct: 257 TNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACC 316
Query: 363 MLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 542
MLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC
Sbjct: 317 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 376
Query: 543 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 644
MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 377 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 442 bits (1136), Expect = e-124
Identities = 210/214 (98%), Positives = 214/214 (100%)
Frame = +3
Query: 3 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 182
HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ
Sbjct: 197 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 256
Query: 183 TNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC 362
TNLVPYPRIHFPLATYAPVISAEKAYHEQL+V+EITNACFEPANQMVKCDPRHGKYMACC
Sbjct: 257 TNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACC 316
Query: 363 MLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 542
+LYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC
Sbjct: 317 LLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 376
Query: 543 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 644
MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 377 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 442 bits (1136), Expect = e-124
Identities = 211/214 (98%), Positives = 212/214 (99%)
Frame = +3
Query: 3 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 182
HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ
Sbjct: 197 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 256
Query: 183 TNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC 362
TNLVPYPRIHFPL TYAPVISAEKAYHE LSVAEITNACFEPANQMVKCDPRHGKYMACC
Sbjct: 257 TNLVPYPRIHFPLVTYAPVISAEKAYHEMLSVAEITNACFEPANQMVKCDPRHGKYMACC 316
Query: 363 MLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 542
MLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC
Sbjct: 317 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 376
Query: 543 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 644
MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 377 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 441 bits (1134), Expect = e-123
Identities = 211/214 (98%), Positives = 212/214 (99%)
Frame = +3
Query: 3 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 182
HSDCAFMVDNEAIYDICRRNLDIE PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ
Sbjct: 197 HSDCAFMVDNEAIYDICRRNLDIEPPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 256
Query: 183 TNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC 362
TNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC
Sbjct: 257 TNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC 316
Query: 363 MLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 542
MLYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC
Sbjct: 317 MLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 376
Query: 543 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 644
MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 377 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
>sp|P02550|TBA_PIG Tubulin alpha chain
Length = 451
Score = 441 bits (1134), Expect = e-123
Identities = 210/214 (98%), Positives = 213/214 (99%)
Frame = +3
Query: 3 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 182
HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ
Sbjct: 197 HSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 256
Query: 183 TNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC 362
TNLVPYPR HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC
Sbjct: 257 TNLVPYPRAHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC 316
Query: 363 MLYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVC 542
+LYRGDVVPKDVNA+IATIKTKRTIQFVDWCPTGFKVGINY+PPTVVPGGDLAKVQRAVC
Sbjct: 317 LLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVC 376
Query: 543 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 644
MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG
Sbjct: 377 MLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVG 410
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,991,448
Number of Sequences: 369166
Number of extensions: 1780808
Number of successful extensions: 4889
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4645
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6776504000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)