Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_M19
(396 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P25491|MAS5_YEAST Mitochondrial protein import protein M... 52 4e-07
sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 48 8e-06
sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) 46 2e-05
sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1 45 4e-05
sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1) 45 5e-05
sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 (AtDjA2) 44 1e-04
sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1) 42 4e-04
sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (Mm... 41 0.001
sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 41 0.001
sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (He... 40 0.002
>sp|P25491|MAS5_YEAST Mitochondrial protein import protein MAS5 (Protein YDJ1)
Length = 409
Score = 52.0 bits (123), Expect = 4e-07
Identities = 32/84 (38%), Positives = 43/84 (51%)
Frame = +3
Query: 39 TVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHE 218
T+ FPEN+F + L KL ILPP + ++ +ECVL +DP+ N R
Sbjct: 332 TIKFPENHFTSEENLKKLEEILPP-RIVPAIPKKATVDECVLADFDPAKYNRTRASRGGA 390
Query: 219 RHHVYDSDDEGGMPGGAQRVQCAS 290
YDSD+E G + VQCAS
Sbjct: 391 N---YDSDEE---EQGGEGVQCAS 408
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2
Length = 418
Score = 47.8 bits (112), Expect = 8e-06
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +3
Query: 39 TVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMK--EAEECVLHPYDPSMANSKSQDRY 212
+V FP++ L D+ L S+LP S+ +S L +M+ E EE +H D ++ + ++
Sbjct: 339 SVDFPDS--LTPDQCKALESVLP-SRNASRLTDMEIDECEETTMH--DVNIEEEMRRKQH 393
Query: 213 HERHHVYDSDDEGGMPGGAQRVQCA 287
+ YD DDEG GGAQRVQCA
Sbjct: 394 QQAQEAYDEDDEG--HGGAQRVQCA 416
>sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3)
Length = 420
Score = 46.2 bits (108), Expect = 2e-05
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +3
Query: 39 TVVFPENNFLPTDKLNKLRSILP-PSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYH 215
TV FP++ L D+ L ++LP PS S + E EE LH D ++ + +
Sbjct: 339 TVEFPDS--LSPDQTKALEAVLPKPSTAQLSDMEIDECEETTLH--DVNIEDEMRRKAQA 394
Query: 216 ERHHVYDSDDEGGMPGGAQRVQCA 287
+R D D++ PGGAQRVQCA
Sbjct: 395 QREAYDDDDEDDDHPGGAQRVQCA 418
>sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1
Length = 417
Score = 45.4 bits (106), Expect = 4e-05
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +3
Query: 39 TVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMK--EAEECVLHPYDPSMANSKSQDRY 212
TV FP++ L D++ L +ILPP S SL M+ E EE LH + ++ + +
Sbjct: 339 TVEFPDS--LNPDQVKSLEAILPPKP-SMSLTYMELDECEETTLH--NVNIEEEMKRKQT 393
Query: 213 HERHHVYDSDDEGGMPGGAQRVQCA 287
+ YD DDE P G QRVQCA
Sbjct: 394 QAQQEAYDEDDE---PAGGQRVQCA 415
>sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1)
Length = 397
Score = 45.1 bits (105), Expect = 5e-05
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +3
Query: 42 VVFPENNFLPTDKLNKLRSILPPSQFSSSLD-NMKEAEECVLHPYDPSMANSKSQDRYHE 218
V FP++ L D+ + S+LP S S D + E EE +H D ++ + ++
Sbjct: 319 VDFPDS--LTPDQCKVIESVLPRSASSQLTDMEIDECEETTMH--DVNIEEEMRRKQHQH 374
Query: 219 RHHVYDSDDEGGMPGGAQRVQCA 287
YD DDEG GG QRVQCA
Sbjct: 375 AQEAYDEDDEG--HGGGQRVQCA 395
>sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 (AtDjA2)
Length = 419
Score = 43.9 bits (102), Expect = 1e-04
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +3
Query: 39 TVVFPENNFLPTDKLNKLRSILP-PSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYH 215
TV FPE+ L D+ + ++LP P++ + S + + EE LH + + + +
Sbjct: 340 TVEFPES--LSPDQTKAIEAVLPKPTKAAISDMEIDDCEETTLHDVN---IEDEMKRKAQ 394
Query: 216 ERHHVYDSDDEGGMPGGAQRVQCA 287
+ YD DDE PGGAQRVQCA
Sbjct: 395 AQREAYD-DDEEDHPGGAQRVQCA 417
>sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1)
Length = 413
Score = 42.0 bits (97), Expect = 4e-04
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +3
Query: 39 TVVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMK--EAEECVLHPYDPSMANSKSQDRY 212
+V FP++ L ++ L +LPP + S L +M+ E EE LH N + + R
Sbjct: 337 SVEFPDS--LNPEQCKALEGVLPP-RTSVQLSDMELDECEETTLHD-----VNIEEEMRR 388
Query: 213 HERHHVYDSDDEGGMPGGAQRVQCA 287
+ YD D++ M GGAQRVQCA
Sbjct: 389 KQAQEAYDEDED--MHGGAQRVQCA 411
>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (MmDjA4)
Length = 397
Score = 40.8 bits (94), Expect = 0.001
Identities = 26/81 (32%), Positives = 40/81 (49%)
Frame = +3
Query: 42 VVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHER 221
VVFPE +L +KL +L ++LPP Q D+M + E L ++P ++ + +
Sbjct: 327 VVFPEKQWLSQEKLPQLEALLPPRQKVRITDDMDQVE---LKEFNP------NEQSWRQH 377
Query: 222 HHVYDSDDEGGMPGGAQRVQC 284
Y+ DDE G VQC
Sbjct: 378 REAYEEDDEEPRAG----VQC 394
>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4
Length = 397
Score = 40.8 bits (94), Expect = 0.001
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = +3
Query: 42 VVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHER 221
V+FPE ++L +KL +L ++LPP Q D+M + E L + P+ N + +
Sbjct: 327 VIFPEKHWLSLEKLPQLEALLPPRQKVRITDDMDQVE---LKEFCPNEQN------WRQH 377
Query: 222 HHVYDSDDEGGMPGGAQRVQC 284
Y+ D++G G VQC
Sbjct: 378 REAYEEDEDGPQAG----VQC 394
>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2) (HSDJ)
Length = 397
Score = 39.7 bits (91), Expect = 0.002
Identities = 28/77 (36%), Positives = 36/77 (46%)
Frame = +3
Query: 42 VVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHER 221
V FPEN FL DKL+ L +LP + D M + E L +DP+ + R H
Sbjct: 326 VNFPENGFLSPDKLSLLEKLLPERKEVEETDEMDQVE---LVDFDPN-----QERRRHYN 377
Query: 222 HHVYDSDDEGGMPGGAQ 272
Y+ DDE GG Q
Sbjct: 378 GEAYE-DDEHHPRGGVQ 393
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,329,230
Number of Sequences: 369166
Number of extensions: 737347
Number of successful extensions: 2171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2166
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)