Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_M11
(775 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9LKA5|UMP1_ARATH Unknown mitochondrial protein At3g15000 39 0.012
sp|P08472|M130_STRPU Mesenchyme-specific cell surface glyco... 36 0.13
sp|Q7UZZ9|IF2_PROMP Translation initiation factor IF-2 35 0.30
sp|Q9D0E1|HNRPM_MOUSE Heterogeneous nuclear ribonucleoprote... 35 0.30
sp|Q62826|HNRPM_RAT Heterogeneous nuclear ribonucleoprotein... 33 0.66
sp|P52272|HNRPM_HUMAN Heterogeneous nuclear ribonucleoprote... 33 0.86
sp|Q835U8|IF2_ENTFA Translation initiation factor IF-2 33 0.86
sp|Q49378|P32_MYCGA P32 adhesin (Cytadhesin P32) 33 0.86
sp|Q8W234|SEUSS_ARATH Transcriptional corepressor SEUSS 33 1.1
sp|Q15532|SSXT_HUMAN SSXT protein (Synovial sarcoma, transl... 32 1.5
>sp|Q9LKA5|UMP1_ARATH Unknown mitochondrial protein At3g15000
Length = 395
Score = 39.3 bits (90), Expect = 0.012
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Frame = +3
Query: 54 PNIGGQNMPPNIGGQ-NMPPNIGGQNMLPNISSQSIGSQNMPMNAGGQNMP--------M 206
P +GG PP+IGG PP++GG P Q+ G P N GG P
Sbjct: 246 PPMGGPPPPPHIGGSAPPPPHMGGSAPPPPHMGQNYGPP-PPNNMGGPRHPPPYGAPPQN 304
Query: 207 NVGGQNMPMNVGG 245
N+GG P N GG
Sbjct: 305 NMGGPRPPQNYGG 317
Score = 39.3 bits (90), Expect = 0.012
Identities = 33/101 (32%), Positives = 39/101 (38%), Gaps = 13/101 (12%)
Frame = +3
Query: 9 PPSHIGQNLPNQNMVPNIGGQNMPP-------------NIGGQNMPPNIGGQNMLPNISS 149
PP HIG + P P++GG PP N+GG PP G
Sbjct: 253 PPPHIGGSAPPP---PHMGGSAPPPPHMGQNYGPPPPNNMGGPRHPPPYGAP-------- 301
Query: 150 QSIGSQNMPMNAGGQNMPMNVGGQNMPMNVGGQNMSMNVGG 272
QN N GG P N GG P N GG + N+GG
Sbjct: 302 ----PQN---NMGGPRPPQNYGG-TPPPNYGGAPPANNMGG 334
>sp|P08472|M130_STRPU Mesenchyme-specific cell surface glycoprotein precursor (MSP130)
Length = 779
Score = 35.8 bits (81), Expect = 0.13
Identities = 26/71 (36%), Positives = 26/71 (36%)
Frame = +3
Query: 63 GGQNMPPNIGGQNMPPNIGGQNMLPNISSQSIGSQNMPMNAGGQNMPMNVGGQNMPMNVG 242
GGQ P GGQ GGQ P Q G Q GGQ GGQ P
Sbjct: 267 GGQGQYPGQGGQGGQGGQGGQGQYPGQGGQ--GGQGGQGGQGGQGGYPGQGGQGGPGYYP 324
Query: 243 GQNMSMNVGGQ 275
GQ GGQ
Sbjct: 325 GQGGQGGQGGQ 335
>sp|Q7UZZ9|IF2_PROMP Translation initiation factor IF-2
Length = 1169
Score = 34.7 bits (78), Expect = 0.30
Identities = 28/86 (32%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Frame = +3
Query: 3 NMPPSHIGQNLPNQNMVP-NIGGQNMPPNIGGQNMPPNIGGQNM--LPNISSQSIGSQNM 173
N P Q +PN+ P G N P Q P GGQN +PN Q
Sbjct: 285 NRPGGQNRQGVPNREGGPYRQGSPNRPGTPYRQGAPNRPGGQNRQGVPNREGGGPYRQGS 344
Query: 174 PMNAGGQNMPMNVGGQNMPMNVGGQN 251
P G N P Q P GGQN
Sbjct: 345 PNRPGTPNRPGTPYRQGAPNRPGGQN 370
>sp|Q9D0E1|HNRPM_MOUSE Heterogeneous nuclear ribonucleoprotein M (hnRNP M)
Length = 729
Score = 34.7 bits (78), Expect = 0.30
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Frame = +3
Query: 12 PSHIGQN---LPNQNMVPNIGGQNMPPNIGGQNMPPNIGGQNMLPNISSQSIGSQNM-PM 179
P H+ + LP + P Q +P +GG M GGQ + N S+ IG N+ P
Sbjct: 272 PMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLSKGIGMGNLGPA 331
Query: 180 NAGGQNMPM---NVGGQNMPMNVGGQNM-----SMNVG 269
G + + +GG P G +NM MN+G
Sbjct: 332 GMGMEGIGFGINKIGGMEGPFGGGMENMGRFGSGMNMG 369
>sp|Q62826|HNRPM_RAT Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4 protein)
Length = 690
Score = 33.5 bits (75), Expect = 0.66
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Frame = +3
Query: 12 PSHIGQN---LPNQNMVPNIGGQNMPPNIGGQNMPPNIGGQNMLPNISSQSIGSQNM-PM 179
P H+ + LP + P Q +P +GG M GGQ + N ++ IG N+ P
Sbjct: 233 PMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNKGIGMGNLGPA 292
Query: 180 NAGGQNMPM---NVGGQNMPMNVGGQNM-----SMNVG 269
G + + +GG P G +NM MN+G
Sbjct: 293 GMGMEGIGFGINKIGGMEGPFGGGMENMGRFGSGMNMG 330
>sp|P52272|HNRPM_HUMAN Heterogeneous nuclear ribonucleoprotein M (hnRNP M)
Length = 730
Score = 33.1 bits (74), Expect = 0.86
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Frame = +3
Query: 12 PSHIGQN---LPNQNMVPNIGGQNMPPNIGGQNMPPNIGGQNMLPNISSQSIGSQNM-PM 179
P H+ + LP + P Q +P +GG M GGQ + N ++ IG N+ P
Sbjct: 273 PMHVKMDERALPKGDFFPPERPQQLPHGLGGIGMGLGPGGQPIDANHLNKGIGMGNIGPA 332
Query: 180 NAGGQNMPMNV---GGQNMPMNVGGQNM-----SMNVG 269
G + + + GG P G +NM MN+G
Sbjct: 333 GMGMEGIGFGINKMGGMEGPFGGGMENMGRFGSGMNMG 370
>sp|Q835U8|IF2_ENTFA Translation initiation factor IF-2
Length = 798
Score = 33.1 bits (74), Expect = 0.86
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +3
Query: 27 QNLPNQNMVPNIGGQNMPPNIGGQNMPPNIGGQNMLPNISSQSIGSQNMPMNAGGQNMPM 206
QN PN N N GQ+ N Q N ++Q+ +QN + QN
Sbjct: 92 QNRPNNQSTNGQQRNNNNQNRHGQSNTQNRSNQT---NTNNQNRNTQNNNGSTTNQNRTS 148
Query: 207 --NVGGQNMPMNVGGQNMSMNVGG 272
N GG N N GGQN + N GG
Sbjct: 149 QNNNGGNNQ--NRGGQNRNNNFGG 170
>sp|Q49378|P32_MYCGA P32 adhesin (Cytadhesin P32)
Length = 294
Score = 33.1 bits (74), Expect = 0.86
Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Frame = +3
Query: 6 MPPSHIGQNLPNQNMVPNIGGQ----NMPPNIGGQNMP-----PNIGGQNMLPNISSQSI 158
MPP+ +G M P +GG N P + N P P GG + N +
Sbjct: 196 MPPNQMGMRPGFNQMPPQMGGMPPRPNFPNQMPNMNQPRPGFRPQPGGGVPMGNKAGGGF 255
Query: 159 GSQNMPMNAGGQNMPMNVGGQNMPMNVGG 245
PM N P G N P ++ G
Sbjct: 256 NHPGTPMGPNRMNFPNQ--GMNQPPHMAG 282
Score = 32.0 bits (71), Expect = 1.9
Identities = 27/81 (33%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Frame = +3
Query: 36 PNQNMVPNIGGQNMPPNIGGQN-----MPPNIGGQNMLPNISSQSIGSQNMPMNAGGQNM 200
P Q + P G M PN G MPP +GG M PN M M G M
Sbjct: 162 PQQRINPQCFGGPMQPNQMGMRPGFNQMPPQMGG--MPPN---------QMGMRPGFNQM 210
Query: 201 PMNVGGQNMPMNVGGQNMSMN 263
P +GG N Q +MN
Sbjct: 211 PPQMGGMPPRPNFPNQMPNMN 231
Score = 29.6 bits (65), Expect = 9.5
Identities = 28/95 (29%), Positives = 32/95 (33%), Gaps = 6/95 (6%)
Frame = +3
Query: 9 PPSHIGQNLPNQNMVPNIGGQNMPPNIGG---QNMPPNIGGQNMLPNISSQSIGSQNMPM 179
P G N+ N N I + P G Q + P G M PN G MP
Sbjct: 133 PTQPAGVNVAN-NPQMGINQPQINPQFGPNPQQRINPQCFGGPMQPNQMGMRPGFNQMPP 191
Query: 180 NAGG---QNMPMNVGGQNMPMNVGGQNMSMNVGGQ 275
GG M M G MP +GG N Q
Sbjct: 192 QMGGMPPNQMGMRPGFNQMPPQMGGMPPRPNFPNQ 226
>sp|Q8W234|SEUSS_ARATH Transcriptional corepressor SEUSS
Length = 877
Score = 32.7 bits (73), Expect = 1.1
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +3
Query: 33 LPNQNMVPNIGGQNMPPNI-GGQNMPPNIGGQNMLPNISS---QSIGSQNMPMNAGGQNM 200
+P++ P GG+N+PP+I GGQ P + Q P++ S Q + +M M N+
Sbjct: 2 VPSEPPNPVGGGENVPPSILGGQGGAP-LPSQPAFPSLVSPRTQFGNNMSMSMLGNAPNI 60
Query: 201 PMNVGGQNMPMNVGGQNMSMNVGG 272
+ Q+ + G +SM+ G
Sbjct: 61 SSLLNNQSFVNGIPGSMISMDTSG 84
>sp|Q15532|SSXT_HUMAN SSXT protein (Synovial sarcoma, translocated to X chromosome) (SYT
protein)
Length = 418
Score = 32.3 bits (72), Expect = 1.5
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 23/96 (23%)
Frame = +3
Query: 42 QNMVPNIGGQNMPPNIGGQNM-----PPN---------IGGQNMLPNISSQSIGS----Q 167
Q+++P QNMP GG N PP +GG P++ +Q G
Sbjct: 72 QSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPN 131
Query: 168 NMPMNAGGQN-MPMNVGGQNMPM----NVGGQNMSM 260
+MPM G N + M NMP ++GG N S+
Sbjct: 132 HMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSV 167
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,841,370
Number of Sequences: 369166
Number of extensions: 1863538
Number of successful extensions: 5111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5018
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7212136400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)