Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_M09-1
(332 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3... 63 2e-10
sp|P55115|NAS15_CAEEL Zinc metalloproteinase nas-15 precurs... 53 3e-07
sp|P34269|TYR1_CAEEL Putative tyrosinase-like protein tyr-1... 50 1e-06
sp|Q20191|NAS13_CAEEL Zinc metalloproteinase nas-13 precurs... 49 3e-06
sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor 42 3e-04
sp|P54190|TES26_TOXCA 26 kDa secreted antigen precursor (To... 42 6e-04
sp|P91137|NAS9_CAEEL Zinc metalloproteinase nas-9 precursor... 39 0.005
sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromo... 39 0.005
sp|Q9QXX0|JAG1_MOUSE Jagged-1 precursor (Jagged1) 37 0.014
sp|Q63722|JAG1_RAT Jagged-1 precursor (Jagged1) 37 0.014
>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 precursor
Length = 683
Score = 62.8 bits (151), Expect = 2e-10
Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 38/111 (34%)
Frame = +3
Query: 75 CKDLQIHCLYWANAGECQLNPGWAKQNCPFSCQHC----------GGCRDLIQN------ 206
C D +C W+ +GEC NP W +NC SCQ C GG D I N
Sbjct: 506 CSDRHTNCAMWSRSGECNKNPLWMSENCRSSCQKCGRSRAATCGGGGGADSISNPTTMPP 565
Query: 207 ----------------------CQNFANQGYCKTNEVYMNQSCKKTCGFCR 293
C +A +G C++N YM CK +CG CR
Sbjct: 566 ATNNGQQNTPCDSPMCYNEDQCCPIWAQRGQCRSNPGYMTCQCKVSCGVCR 616
Score = 55.1 bits (131), Expect = 5e-08
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +3
Query: 69 PNCKDLQIHCLYWANAGECQLNPGWAKQNCPFSCQHC------GGCRDLIQNCQNFANQG 230
P C + C WA G+C+ NPG+ C SC C G C D +C +A +G
Sbjct: 579 PMCYNEDQCCPIWAQRGQCRSNPGYMTCQCKVSCGVCRPNYVYGPCADYHYDCAAWARRG 638
Query: 231 YCKTNEVYMNQSCKKTCGFC 290
C N+ +M ++C+++C C
Sbjct: 639 ECLKNK-WMPENCRRSCNTC 657
Score = 51.6 bits (122), Expect = 6e-07
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Frame = +3
Query: 96 CLYWANAGECQLNPGWAKQNCPFSCQHCGG-------CRDLIQNCQNFANQGYCKTNEVY 254
C W+ GECQ NP + C SC+ C C D NC ++ G C N ++
Sbjct: 469 CGPWSAKGECQKNPVYMNVWCKASCRQCTPNYNINEECSDRHTNCAMWSRSGECNKNPLW 528
Query: 255 MNQSCKKTCGFC 290
M+++C+ +C C
Sbjct: 529 MSENCRSSCQKC 540
Score = 38.1 bits (87), Expect = 0.006
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +3
Query: 75 CKDLQIHCLYWANAGECQLNPGWAKQNCPFSCQHCGGCRDLIQNC 209
C D C WA GEC N W +NC SC C + L C
Sbjct: 624 CADYHYDCAAWARRGECLKNK-WMPENCRRSCNTCVNQQQLAARC 667
>sp|P55115|NAS15_CAEEL Zinc metalloproteinase nas-15 precursor (Nematode astacin 15)
Length = 571
Score = 52.8 bits (125), Expect = 3e-07
Identities = 31/118 (26%), Positives = 41/118 (34%), Gaps = 46/118 (38%)
Frame = +3
Query: 75 CKDLQIHCLYWANAGECQLNPGWAKQNCPFSCQHC------------------------- 179
C++L+ C A G C NPGW + NCP SC C
Sbjct: 354 CRNLRGDCDDLAKQGWCIRNPGWMRANCPISCGMCIPTKETQKPYVQTTTQAATTTARPQ 413
Query: 180 ---------------------GGCRDLIQNCQNFANQGYCKTNEVYMNQSCKKTCGFC 290
C DL +C +Q YCK ++ +M C K+CGFC
Sbjct: 414 KPVTQPIQPLPPVPPLPPTTPEDCEDLRVDCLVLVSQRYCKISQNFMKSYCAKSCGFC 471
Score = 34.3 bits (77), Expect = 0.093
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 75 CKDLQIHCLYWANAGECQ-LNPGWAKQNCPFSCQHC 179
C D + C +W +AG C+ + + K+NCP SC C
Sbjct: 536 CSDRKHFCSHWKSAGFCEGIFMNYMKKNCPASCGLC 571
Score = 31.2 bits (69), Expect = 0.78
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 72 NCKDLQIHCLYWANAGECQLNPGWAKQNCPFSCQHC 179
+C+DL++ CL + C+++ + K C SC C
Sbjct: 436 DCEDLRVDCLVLVSQRYCKISQNFMKSYCAKSCGFC 471
Score = 28.5 bits (62), Expect = 5.1
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 186 CRDLIQNCQNFANQGYCKTNEV-YMNQSCKKTCGFC 290
C D C ++ + G+C+ + YM ++C +CG C
Sbjct: 536 CSDRKHFCSHWKSAGFCEGIFMNYMKKNCPASCGLC 571
>sp|P34269|TYR1_CAEEL Putative tyrosinase-like protein tyr-1 precursor
Length = 601
Score = 50.4 bits (119), Expect = 1e-06
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = +3
Query: 72 NCKDLQIHCLYWANAGECQLNPGWAKQNCPFSCQHCG------GCRDLIQNCQNFANQGY 233
NC + C W+ EC+ N + + C SC C GC D +C + Q +
Sbjct: 479 NCYNEDPCCNQWSRQNECRTNTVYMNRYCRKSCGLCQSNDNNRGCHDRHISCAYWRGQNF 538
Query: 234 CKTNEVYMNQSCKKTCGFC 290
C +M ++C+ TCG+C
Sbjct: 539 CTRRRQWMAENCQATCGWC 557
Score = 42.4 bits (98), Expect = 3e-04
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 207 CQNFANQGYCKTNEVYMNQSCKKTCGFCR 293
C ++ Q C+TN VYMN+ C+K+CG C+
Sbjct: 487 CNQWSRQNECRTNTVYMNRYCRKSCGLCQ 515
>sp|Q20191|NAS13_CAEEL Zinc metalloproteinase nas-13 precursor (Nematode astacin 13)
Length = 527
Score = 49.3 bits (116), Expect = 3e-06
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Frame = +3
Query: 75 CKDLQIHCLYWANAGECQ--LNPGWAKQNCPFSCQHCGG-------CRDLIQNCQNFANQ 227
C+D + C + A AG C+ + + +NC SC C C D C+ +AN
Sbjct: 445 CEDRRKDCEFLARAGHCESRFSIRFMTENCANSCGKCIAEEKRKEVCEDARTWCERWANS 504
Query: 228 GYCKTN--EVYMNQSCKKTCGFC 290
G C + YM Q C K+C FC
Sbjct: 505 GMCNQTVFKDYMRQKCAKSCNFC 527
Score = 31.2 bits (69), Expect = 0.78
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +3
Query: 180 GGCRDLIQNCQNFANQGYCKT--NEVYMNQSCKKTCGFC 290
G C D ++C+ A G+C++ + +M ++C +CG C
Sbjct: 443 GKCEDRRKDCEFLARAGHCESRFSIRFMTENCANSCGKC 481
>sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor
Length = 180
Score = 42.4 bits (98), Expect = 3e-04
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 75 CKDLQIHCLYWANAGECQLNPGWAKQNCPFSCQHCGGCRDLIQNCQNFANQGYC-KTNEV 251
C DL C Y N + + CP +C C C D + C + +G+C K +
Sbjct: 107 CTDLANDCSYNQNRCSVKEYSSLMHRLCPKTCNACNICEDANKMCPIWVPRGFCSKFDHD 166
Query: 252 YMNQSCKKTCGFCR 293
+ +SC K+C C+
Sbjct: 167 KVQKSCAKSCNICK 180
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 19/66 (28%)
Frame = +3
Query: 150 QNCPFSCQHC--------------GG-----CRDLIQNCQNFANQGYCKTNEVYMNQSCK 272
+ CP +C C GG C DL +C N+ K M++ C
Sbjct: 76 EQCPSTCNRCPHNGTNPENKTGGNGGTGTQECTDLANDCSYNQNRCSVKEYSSLMHRLCP 135
Query: 273 KTCGFC 290
KTC C
Sbjct: 136 KTCNAC 141
>sp|P54190|TES26_TOXCA 26 kDa secreted antigen precursor (Toxocara excretory-secretory
antigen 26) (TES-26)
Length = 262
Score = 41.6 bits (96), Expect = 6e-04
Identities = 28/74 (37%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 75 CKDLQIHCLYWANAGECQLNP-GWAKQN-CPFSCQHCGGCRDLIQNCQNFANQGYCKTNE 248
C D C ANAG C P QN C +C C CRD NC N T E
Sbjct: 23 CMDSASDCA--ANAGSCFTRPVSQVLQNRCQRTCNTCD-CRDEANNCAASINLCQNPTFE 79
Query: 249 VYMNQSCKKTCGFC 290
+ C+KTCG C
Sbjct: 80 PLVRDRCQKTCGLC 93
>sp|P91137|NAS9_CAEEL Zinc metalloproteinase nas-9 precursor (Nematode astacin 9)
Length = 546
Score = 38.5 bits (88), Expect = 0.005
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +3
Query: 69 PNCKDLQIHCLYWANAGECQLNP--GWAKQNCPFSCQHC 179
P C D +HC WA G C++ W +NC SC C
Sbjct: 508 PGCDDQNVHCGTWALHGYCKMKEQMKWMNENCKASCDKC 546
Score = 36.2 bits (82), Expect = 0.024
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 183 GCRDLIQNCQNFANQGYCKTNE--VYMNQSCKKTCGFC 290
GC D +C +A GYCK E +MN++CK +C C
Sbjct: 509 GCDDQNVHCGTWALHGYCKMKEQMKWMNENCKASCDKC 546
>sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromosome II precursor
Length = 154
Score = 38.5 bits (88), Expect = 0.005
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Frame = +3
Query: 147 KQNCPFSCQHCGG--------CRDLIQNCQNFANQGYCKT---NEVYMNQSCKKTCGFC 290
+Q CP +C CGG C D NC N+ G+C + + Q C KTC C
Sbjct: 92 QQFCPKTCGFCGGGSTAAPVQCVDSSTNCANWEKNGFCSSTFYDCANKKQYCAKTCKLC 150
>sp|Q9QXX0|JAG1_MOUSE Jagged-1 precursor (Jagged1)
Length = 1218
Score = 37.0 bits (84), Expect = 0.014
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 32/102 (31%)
Frame = +3
Query: 63 SDPNCKDLQIHCLY-----------WANAGECQLNPGWAKQNC--------PFSCQHCGG 185
S PNC+ + CL ++ EC+ +PGW C P +C H G
Sbjct: 329 SGPNCEIAEHACLSDPCHNRGSCKETSSGFECECSPGWTGPTCSTNIDDCSPNNCSHGGT 388
Query: 186 CRDLI-------------QNCQNFANQGYCKTNEVYMNQSCK 272
C+DL+ + CQ AN+ C+ +SCK
Sbjct: 389 CQDLVNGFKCVCPPQWTGKTCQLDANE--CEAKPCVNARSCK 428
Score = 32.7 bits (73), Expect = 0.27
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Frame = +3
Query: 123 CQLNPGWAKQNCPFS-------CQHCGGCRDLIQNCQNFANQGY 233
C PGW QNC + CQ+ CRDL+ + GY
Sbjct: 436 CDCLPGWMGQNCDININDCLGQCQNDASCRDLVNGYRCICPPGY 479
Score = 32.7 bits (73), Expect = 0.27
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +3
Query: 93 HCLYWANAGECQLNPGWAKQNCPFSCQHC--GGCRDLIQNCQNFANQGYCKTNEVYMNQS 266
HC N +C G++ C +C C++ Q C N A+ +CK E Y ++
Sbjct: 501 HCQNEINRFQCLCPTGFSGNLCQLDIDYCEPNPCQNGAQ-CYNRASDYFCKCPEDYEGKN 559
Query: 267 CKKTCGFCR 293
C CR
Sbjct: 560 CSHLKDHCR 568
>sp|Q63722|JAG1_RAT Jagged-1 precursor (Jagged1)
Length = 1219
Score = 37.0 bits (84), Expect = 0.014
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 32/102 (31%)
Frame = +3
Query: 63 SDPNCKDLQIHCLY-----------WANAGECQLNPGWAKQNC--------PFSCQHCGG 185
S PNC+ + CL ++ EC+ +PGW C P +C H G
Sbjct: 329 SGPNCEIAEHACLSDPCHNRGSCKETSSGFECECSPGWTGPTCSTNIDDCSPNNCSHGGT 388
Query: 186 CRDLI-------------QNCQNFANQGYCKTNEVYMNQSCK 272
C+DL+ + CQ AN+ C+ +SCK
Sbjct: 389 CQDLVNGFKCVCPPQWTGKTCQLDANE--CEAKPCVNARSCK 428
Score = 32.7 bits (73), Expect = 0.27
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Frame = +3
Query: 123 CQLNPGWAKQNCPFS-------CQHCGGCRDLIQNCQNFANQGY 233
C PGW QNC + CQ+ CRDL+ + GY
Sbjct: 436 CDCLPGWMGQNCDININDCLGQCQNDASCRDLVNGYRCICPPGY 479
Score = 32.7 bits (73), Expect = 0.27
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = +3
Query: 93 HCLYWANAGECQLNPGWAKQNCPFSCQHC--GGCRDLIQNCQNFANQGYCKTNEVYMNQS 266
HC N +C G++ C +C C++ Q C N A+ +CK E Y ++
Sbjct: 501 HCQNEINRFQCLCPTGFSGNLCQLDIDYCEPNPCQNGAQ-CYNRASDYFCKCPEDYEGKN 559
Query: 267 CKKTCGFCR 293
C CR
Sbjct: 560 CSHLKDHCR 568
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,837,976
Number of Sequences: 369166
Number of extensions: 670967
Number of successful extensions: 2037
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2001
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1726260800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)