Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_L21
(896 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46472|PRS7_XENLA 26S protease regulatory subunit 7 (MSS... 444 e-124
sp|P46471|PRS7_MOUSE 26S protease regulatory subunit 7 (MSS... 442 e-124
sp|P35998|PRS7_HUMAN 26S protease regulatory subunit 7 (MSS... 442 e-124
sp|Q63347|PRS7_RAT 26S protease regulatory subunit 7 (MSS1 ... 440 e-123
sp|Q18787|PRS7_CAEEL Probable 26S protease regulatory subun... 413 e-115
sp|O64982|PRS7_PRUPE 26S protease regulatory subunit 7 (26S... 391 e-108
sp|Q41365|PRS7_SPIOL 26S protease regulatory subunit 7 (26S... 389 e-108
sp|Q9SSB5|PRS7_ARATH 26S protease regulatory subunit 7 (26S... 387 e-107
sp|Q9FXT9|PRS7_ORYSA 26S protease regulatory subunit 7 (26S... 385 e-107
sp|O42931|PRS7_SCHPO 26S protease regulatory subunit 7 homolog 370 e-102
>sp|P46472|PRS7_XENLA 26S protease regulatory subunit 7 (MSS1 protein)
Length = 433
Score = 444 bits (1141), Expect = e-124
Identities = 226/296 (76%), Positives = 242/296 (81%), Gaps = 1/296 (0%)
Frame = +2
Query: 11 MPDYLGTDQRXXXXXXXXXXXX-SLDEGDIALLKTYGAAPYSKEIKQCEDDNQNILKRVN 187
MPDYLG DQR SLDEGDIALLKTYG + YS++IKQ EDD Q +LK++N
Sbjct: 1 MPDYLGADQRKTKEEEKEDKPIRSLDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKIN 60
Query: 188 ELAGVKESDTGXXXXXXXXXXXXKVCLSSEHPLQVARCTKIINADSEEPKYIINVKQFAK 367
EL G+KESDTG K L SE PLQVARCTKIINADSE+PKYIINVKQFAK
Sbjct: 61 ELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAK 120
Query: 368 FVVDLAETVAPTDIEEGMRVGVDRTKYQIHIPLPPKIDPSVTMMQVEEKPDVTYSDVGGC 547
FVVDL++ VAPTDIEEGMRVGVDR KYQIHIPLPPKIDP+VTMMQVEEKPDVTYSDVGGC
Sbjct: 121 FVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGC 180
Query: 548 KEQIEKLREVVEMPMLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 727
KEQIEKLREVVE P+LHPE+FVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRV
Sbjct: 181 KEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 240
Query: 728 IGSELVQKYVGEGARMVRELFELARSKKACIIFFDEIXXXXXXXXXXXXXXXNEVQ 895
IGSELVQKYVGEGARMVRELFE+AR+KKAC+IFFDEI NEVQ
Sbjct: 241 IGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQ 296
>sp|P46471|PRS7_MOUSE 26S protease regulatory subunit 7 (MSS1 protein)
Length = 433
Score = 442 bits (1138), Expect = e-124
Identities = 225/296 (76%), Positives = 242/296 (81%), Gaps = 1/296 (0%)
Frame = +2
Query: 11 MPDYLGTDQRXXXXXXXXXXXX-SLDEGDIALLKTYGAAPYSKEIKQCEDDNQNILKRVN 187
MPDYLG DQR +LDEGDIALLKTYG + YS++IKQ EDD Q +LK++N
Sbjct: 1 MPDYLGADQRKTKEEEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKIN 60
Query: 188 ELAGVKESDTGXXXXXXXXXXXXKVCLSSEHPLQVARCTKIINADSEEPKYIINVKQFAK 367
EL G+KESDTG K L SE PLQVARCTKIINADSE+PKYIINVKQFAK
Sbjct: 61 ELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAK 120
Query: 368 FVVDLAETVAPTDIEEGMRVGVDRTKYQIHIPLPPKIDPSVTMMQVEEKPDVTYSDVGGC 547
FVVDL++ VAPTDIEEGMRVGVDR KYQIHIPLPPKIDP+VTMMQVEEKPDVTYSDVGGC
Sbjct: 121 FVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGC 180
Query: 548 KEQIEKLREVVEMPMLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 727
KEQIEKLREVVE P+LHPE+FVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRV
Sbjct: 181 KEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 240
Query: 728 IGSELVQKYVGEGARMVRELFELARSKKACIIFFDEIXXXXXXXXXXXXXXXNEVQ 895
IGSELVQKYVGEGARMVRELFE+AR+KKAC+IFFDEI NEVQ
Sbjct: 241 IGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQ 296
>sp|P35998|PRS7_HUMAN 26S protease regulatory subunit 7 (MSS1 protein)
Length = 433
Score = 442 bits (1138), Expect = e-124
Identities = 225/296 (76%), Positives = 242/296 (81%), Gaps = 1/296 (0%)
Frame = +2
Query: 11 MPDYLGTDQRXXXXXXXXXXXX-SLDEGDIALLKTYGAAPYSKEIKQCEDDNQNILKRVN 187
MPDYLG DQR +LDEGDIALLKTYG + YS++IKQ EDD Q +LK++N
Sbjct: 1 MPDYLGADQRKTKEDEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKIN 60
Query: 188 ELAGVKESDTGXXXXXXXXXXXXKVCLSSEHPLQVARCTKIINADSEEPKYIINVKQFAK 367
EL G+KESDTG K L SE PLQVARCTKIINADSE+PKYIINVKQFAK
Sbjct: 61 ELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAK 120
Query: 368 FVVDLAETVAPTDIEEGMRVGVDRTKYQIHIPLPPKIDPSVTMMQVEEKPDVTYSDVGGC 547
FVVDL++ VAPTDIEEGMRVGVDR KYQIHIPLPPKIDP+VTMMQVEEKPDVTYSDVGGC
Sbjct: 121 FVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGC 180
Query: 548 KEQIEKLREVVEMPMLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 727
KEQIEKLREVVE P+LHPE+FVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRV
Sbjct: 181 KEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 240
Query: 728 IGSELVQKYVGEGARMVRELFELARSKKACIIFFDEIXXXXXXXXXXXXXXXNEVQ 895
IGSELVQKYVGEGARMVRELFE+AR+KKAC+IFFDEI NEVQ
Sbjct: 241 IGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQ 296
>sp|Q63347|PRS7_RAT 26S protease regulatory subunit 7 (MSS1 protein)
Length = 433
Score = 440 bits (1131), Expect = e-123
Identities = 224/296 (75%), Positives = 241/296 (81%), Gaps = 1/296 (0%)
Frame = +2
Query: 11 MPDYLGTDQRXXXXXXXXXXXX-SLDEGDIALLKTYGAAPYSKEIKQCEDDNQNILKRVN 187
MPDYLG DQR +LDEGDIALLKTYG + YS++IKQ EDD Q +LK++N
Sbjct: 1 MPDYLGADQRKTKEDEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKIN 60
Query: 188 ELAGVKESDTGXXXXXXXXXXXXKVCLSSEHPLQVARCTKIINADSEEPKYIINVKQFAK 367
EL G+KESDTG K L SE PLQVARCTKIINADSE+PKYIINVKQFAK
Sbjct: 61 ELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAK 120
Query: 368 FVVDLAETVAPTDIEEGMRVGVDRTKYQIHIPLPPKIDPSVTMMQVEEKPDVTYSDVGGC 547
FVVDL++ VAPTDIEEGMRVGVDR KYQIHIPLPPKIDP+VTMMQVEEKPDVTYSDVGGC
Sbjct: 121 FVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGC 180
Query: 548 KEQIEKLREVVEMPMLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRV 727
KEQIEKLREVVE P+LHPE+FVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFI V
Sbjct: 181 KEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIPV 240
Query: 728 IGSELVQKYVGEGARMVRELFELARSKKACIIFFDEIXXXXXXXXXXXXXXXNEVQ 895
IGSELVQKYVGEGARMVRELFE+AR+KKAC+IFFDEI NEVQ
Sbjct: 241 IGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQ 296
>sp|Q18787|PRS7_CAEEL Probable 26S protease regulatory subunit 7
Length = 435
Score = 413 bits (1061), Expect = e-115
Identities = 207/298 (69%), Positives = 235/298 (78%), Gaps = 3/298 (1%)
Frame = +2
Query: 11 MPDYLGTDQRXXXXXXXXXXXXS---LDEGDIALLKTYGAAPYSKEIKQCEDDNQNILKR 181
MPD+LG D R + LDEGDIA+LK YG PY++++K + D +N LK+
Sbjct: 1 MPDHLGDDMRKTKKDDTKEEEKNFQALDEGDIAVLKRYGQGPYAEQLKTLDADIENCLKK 60
Query: 182 VNELAGVKESDTGXXXXXXXXXXXXKVCLSSEHPLQVARCTKIINADSEEPKYIINVKQF 361
VNEL+GVKESDTG K + E PLQVARCTKII +D +P+Y+INVKQF
Sbjct: 61 VNELSGVKESDTGLAPPALWDIAADKQAMQQEQPLQVARCTKIITSDKHDPRYLINVKQF 120
Query: 362 AKFVVDLAETVAPTDIEEGMRVGVDRTKYQIHIPLPPKIDPSVTMMQVEEKPDVTYSDVG 541
AKFVVDLA++VAPTDIEEGMRVGVDR KYQIH+PLP KIDP+VTMMQVEEKPDVTYSDVG
Sbjct: 121 AKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEKPDVTYSDVG 180
Query: 542 GCKEQIEKLREVVEMPMLHPEKFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFI 721
GCK+QIEKLREVVE P+LHPE++VNLGIEPPKGVLL+GPPGTGKTLCARAVANRTDACFI
Sbjct: 181 GCKDQIEKLREVVETPLLHPERYVNLGIEPPKGVLLYGPPGTGKTLCARAVANRTDACFI 240
Query: 722 RVIGSELVQKYVGEGARMVRELFELARSKKACIIFFDEIXXXXXXXXXXXXXXXNEVQ 895
RVIGSELVQKYVGEGARMVRELFE+AR+KKAC+IFFDEI NEVQ
Sbjct: 241 RVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQGGDNEVQ 298
>sp|O64982|PRS7_PRUPE 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S
proteasome AAA-ATPase subunit RPT1) (Regulatory particle
triple-A ATPase subunit 1)
Length = 425
Score = 391 bits (1005), Expect = e-108
Identities = 195/272 (71%), Positives = 218/272 (80%)
Frame = +2
Query: 80 LDEGDIALLKTYGAAPYSKEIKQCEDDNQNILKRVNELAGVKESDTGXXXXXXXXXXXXK 259
LDE DIALLKTYG PYS IK+ E + +++ K+VN+L G+KESDTG K
Sbjct: 17 LDEDDIALLKTYGLGPYSTHIKKAEKEVKDLAKKVNDLCGIKESDTGLAAPSQWDLVSDK 76
Query: 260 VCLSSEHPLQVARCTKIINADSEEPKYIINVKQFAKFVVDLAETVAPTDIEEGMRVGVDR 439
+ E PLQVARCTKIIN +SE+ KY+INVKQ AKFVV L + V+PTDIEEGMRVGVDR
Sbjct: 77 QMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDR 136
Query: 440 TKYQIHIPLPPKIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVEMPMLHPEKFVNL 619
KYQI IPLPPKIDPSVTMM VEEKPDVTY+DVGGCKEQIEK+REVVE+PMLHPEKFV L
Sbjct: 137 NKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKL 196
Query: 620 GIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFELA 799
GI+PPKGVL +GPPGTGKTL ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELF++A
Sbjct: 197 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA 256
Query: 800 RSKKACIIFFDEIXXXXXXXXXXXXXXXNEVQ 895
RSKKACI+FFDE+ NEVQ
Sbjct: 257 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 288
>sp|Q41365|PRS7_SPIOL 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S
proteasome AAA-ATPase subunit RPT1) (Regulatory particle
triple-A ATPase subunit 1)
Length = 426
Score = 389 bits (998), Expect = e-108
Identities = 194/272 (71%), Positives = 218/272 (80%)
Frame = +2
Query: 80 LDEGDIALLKTYGAAPYSKEIKQCEDDNQNILKRVNELAGVKESDTGXXXXXXXXXXXXK 259
LDE DIALLKTYG PYS IK+ E + +++ K+VN+L G+KESDTG K
Sbjct: 18 LDEDDIALLKTYGLGPYSASIKKVEKEIKDMSKKVNDLIGIKESDTGLAAPSQWDLVSDK 77
Query: 260 VCLSSEHPLQVARCTKIINADSEEPKYIINVKQFAKFVVDLAETVAPTDIEEGMRVGVDR 439
+ E PLQVARCTKIIN ++E+ KY+INVKQ AKFVV L + V+PTDIEEGMRVGVDR
Sbjct: 78 QMMQEEQPLQVARCTKIINPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDR 137
Query: 440 TKYQIHIPLPPKIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVEMPMLHPEKFVNL 619
KYQI IPLPPKIDPSVTMM VEEKPDVTY+DVGGCKEQIEK+REVVE+PMLHPEKFV L
Sbjct: 138 NKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKL 197
Query: 620 GIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFELA 799
GI+PPKGVL +GPPGTGKTL ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELF++A
Sbjct: 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA 257
Query: 800 RSKKACIIFFDEIXXXXXXXXXXXXXXXNEVQ 895
RSKKACI+FFDE+ NEVQ
Sbjct: 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289
>sp|Q9SSB5|PRS7_ARATH 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S
proteasome AAA-ATPase subunit RPT1a) (Regulatory
particle triple-A ATPase subunit 1a)
Length = 426
Score = 387 bits (994), Expect = e-107
Identities = 192/272 (70%), Positives = 218/272 (80%)
Frame = +2
Query: 80 LDEGDIALLKTYGAAPYSKEIKQCEDDNQNILKRVNELAGVKESDTGXXXXXXXXXXXXK 259
LDE DIALLKTYG PYS IK+ E + +++ K++N+L G+KESDTG K
Sbjct: 18 LDEDDIALLKTYGLGPYSAPIKKVEKEIKDLAKKINDLCGIKESDTGLAPPSQWDLVSDK 77
Query: 260 VCLSSEHPLQVARCTKIINADSEEPKYIINVKQFAKFVVDLAETVAPTDIEEGMRVGVDR 439
+ E PLQVARCTKII+ ++E+ KY+INVKQ AKFVV L + V+PTDIEEGMRVGVDR
Sbjct: 78 QMMQEEQPLQVARCTKIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDR 137
Query: 440 TKYQIHIPLPPKIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVEMPMLHPEKFVNL 619
KYQI IPLPPKIDPSVTMM VEEKPDVTY+DVGGCKEQIEK+REVVE+PMLHPEKFV L
Sbjct: 138 NKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKL 197
Query: 620 GIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFELA 799
GI+PPKGVL +GPPGTGKTL ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELF++A
Sbjct: 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA 257
Query: 800 RSKKACIIFFDEIXXXXXXXXXXXXXXXNEVQ 895
RSKKACI+FFDE+ NEVQ
Sbjct: 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289
>sp|Q9FXT9|PRS7_ORYSA 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S
proteasome AAA-ATPase subunit RPT1) (Regulatory particle
triple-A ATPase subunit 1)
Length = 426
Score = 385 bits (990), Expect = e-107
Identities = 191/272 (70%), Positives = 217/272 (79%)
Frame = +2
Query: 80 LDEGDIALLKTYGAAPYSKEIKQCEDDNQNILKRVNELAGVKESDTGXXXXXXXXXXXXK 259
LDE DIALLKTYG PYS IK+ E + + + K++N+L G+KESDTG K
Sbjct: 18 LDEDDIALLKTYGLGPYSTSIKKVEKEIKEMAKKINDLCGIKESDTGLAPPSQWDLVSDK 77
Query: 260 VCLSSEHPLQVARCTKIINADSEEPKYIINVKQFAKFVVDLAETVAPTDIEEGMRVGVDR 439
+ E PLQVARCTKII+ ++++ KY+INVKQ AKFVV L + V+PTDIEEGMRVGVDR
Sbjct: 78 QMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDR 137
Query: 440 TKYQIHIPLPPKIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVEMPMLHPEKFVNL 619
KYQI IPLPPKIDPSVTMM VEEKPDVTY+DVGGCKEQIEK+REVVE+PMLHPEKFV L
Sbjct: 138 NKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKL 197
Query: 620 GIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFELA 799
GI+PPKGVL +GPPGTGKTL ARAVANRTDACFIRVIGSELVQKYVGEGARMVRELF++A
Sbjct: 198 GIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMA 257
Query: 800 RSKKACIIFFDEIXXXXXXXXXXXXXXXNEVQ 895
RSKKACI+FFDE+ NEVQ
Sbjct: 258 RSKKACIVFFDEVDAIGGARFDDGVGGDNEVQ 289
>sp|O42931|PRS7_SCHPO 26S protease regulatory subunit 7 homolog
Length = 438
Score = 370 bits (949), Expect = e-102
Identities = 184/274 (67%), Positives = 214/274 (78%), Gaps = 2/274 (0%)
Frame = +2
Query: 80 LDEGDIALLKTYGAAPYSKEIKQCEDDNQNILKRVNELAGVKESDTGXXXXXXXXXXXXK 259
LDEGDI LLK+Y PY++E+ ++D + +LKR+N+ G+KESDTG +
Sbjct: 27 LDEGDIELLKSYATGPYARELAAIKEDTEAVLKRINDTVGIKESDTGLAPISFWDVAADR 86
Query: 260 VCLSSEHPLQVARCTKIINAD--SEEPKYIINVKQFAKFVVDLAETVAPTDIEEGMRVGV 433
+S E PLQVARCTKII + +E+ Y+IN+KQ AKFVV L E V+PTDIEEGMRVG
Sbjct: 87 QRMSEEQPLQVARCTKIIENEQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGC 146
Query: 434 DRTKYQIHIPLPPKIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVEMPMLHPEKFV 613
DR KY I +PLPPKIDPSVTMMQVEEKPDVTY DVGGCKEQIE+LREVVE+P+L PE+FV
Sbjct: 147 DRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFV 206
Query: 614 NLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFE 793
LGI+PPKG++L+GPPGTGKTLCARAVANRTDA FIRVIGSELVQKYVGEGARMVRELFE
Sbjct: 207 KLGIDPPKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFE 266
Query: 794 LARSKKACIIFFDEIXXXXXXXXXXXXXXXNEVQ 895
+AR+KKACIIFFDEI NEVQ
Sbjct: 267 MARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQ 300
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,417,160
Number of Sequences: 369166
Number of extensions: 1618871
Number of successful extensions: 7374
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7286
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9030416440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)