Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_L20
(513 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0 133 2e-31
sp|P41095|RLA0_ORYSA 60S acidic ribosomal protein P0 130 1e-30
sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E) 127 1e-29
sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0) 127 1e-29
sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(... 127 2e-29
sp|O04204|RLA0A_ARATH 60S acidic ribosomal protein P0-A 126 3e-29
sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E) 126 3e-29
sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E) 125 4e-29
sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0 125 4e-29
sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E) 125 6e-29
>sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0
Length = 312
Score = 133 bits (335), Expect = 2e-31
Identities = 69/160 (43%), Positives = 101/160 (63%)
Frame = +1
Query: 7 IINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDRTEDDIWR 186
I+NDV LIK GD V SE+ LL ML + PF YGL ++Q+Y++G+ Y+P+ LD T +++ +
Sbjct: 154 ILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRK 213
Query: 187 GFMESTQKVAAVSLALNKPTLASGPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPT 366
F+ + VA+VSLA+N PTLAS H +AN ++ ++G++ VTD + KEAE IK ++ DP+
Sbjct: 214 RFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPS 273
Query: 367 KFASTTXXXXXXXXXXXXXXXXXXXSESESDGSIGMGLFD 486
KFA+ E ESD +G GLFD
Sbjct: 274 KFAAAAPAAAAAPAAAAPAAKKEEPKE-ESDDDMGFGLFD 312
>sp|P41095|RLA0_ORYSA 60S acidic ribosomal protein P0
Length = 319
Score = 130 bits (328), Expect = 1e-30
Identities = 72/163 (44%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Frame = +1
Query: 7 IINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDRTEDDIWR 186
II V+LIK GD V SE+ LL L I PF YGL I +Y++GS +SP+ LD TEDD+
Sbjct: 157 IITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLME 216
Query: 187 GFMESTQKVAAVSLALNKPTLASGPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPT 366
F VA+VSLA++ PT+A+ PH+ N K V+ ++V T+Y+ A+ IKEYLKDP+
Sbjct: 217 KFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPS 276
Query: 367 KF---ASTTXXXXXXXXXXXXXXXXXXXSESESDGSIGMGLFD 486
KF A E ESDG +GM LFD
Sbjct: 277 KFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319
>sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E)
Length = 315
Score = 127 bits (320), Expect = 1e-29
Identities = 70/162 (43%), Positives = 93/162 (57%), Gaps = 2/162 (1%)
Frame = +1
Query: 7 IINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDRTEDDIWR 186
I++DV LIK GD V SEA LL ML I PF +GL IQQ+Y+NGS YSP+ LD TED +
Sbjct: 154 ILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVYDNGSIYSPEVLDITEDALRA 213
Query: 187 GFMESTQKVAAVSLALNKPTLASGPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPT 366
F+E + +A+V L + PT+AS PH + N K V+ L+V TDY+ A+ +K +L DP+
Sbjct: 214 RFLEGVRNIASVCLQIGYPTVASVPHSVVNGYKRVLALAVETDYSFPLADKVKAFLADPS 273
Query: 367 KF--ASTTXXXXXXXXXXXXXXXXXXXSESESDGSIGMGLFD 486
F A+ ESD +G GLFD
Sbjct: 274 AFVVAAPVAETAAAPAASAAPAKEEKEESEESDDDMGFGLFD 315
>sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0)
Length = 317
Score = 127 bits (320), Expect = 1e-29
Identities = 70/164 (42%), Positives = 94/164 (57%), Gaps = 4/164 (2%)
Frame = +1
Query: 7 IINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDRTEDDIWR 186
IINDV ++K GD V SEA LL ML I PF YGL I Q+Y++GS +SP+ LD +D+
Sbjct: 154 IINDVPILKPGDKVGASEATLLNMLNISPFSYGLAITQVYDSGSIFSPEILDIKPEDLRA 213
Query: 187 GFMESTQKVAAVSLALNKPTLASGPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPT 366
F +AAVSL + PT+AS PH IAN K ++ ++ T+ K+A IKE++KDP+
Sbjct: 214 KFQAGVANLAAVSLQIGYPTIASAPHSIANGFKNLLAIAASTEVEFKQAATIKEFIKDPS 273
Query: 367 KF----ASTTXXXXXXXXXXXXXXXXXXXSESESDGSIGMGLFD 486
KF A++ SESE D +G GLFD
Sbjct: 274 KFVAAAAASAPAAGAGAAAEKKEEAKKEESESEEDDDMGFGLFD 317
>sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(apurinic or apyrimidinic
site) lyase) (Apurinic-apyrimidinic endonuclease)
Length = 317
Score = 127 bits (318), Expect = 2e-29
Identities = 71/164 (43%), Positives = 95/164 (57%), Gaps = 4/164 (2%)
Frame = +1
Query: 7 IINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDRTEDDIWR 186
IINDV ++K GD V SEA LL ML I PF YGL + Q+Y++GS +SP+ LD +D+
Sbjct: 154 IINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRA 213
Query: 187 GFMESTQKVAAVSLALNKPTLASGPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPT 366
F + +AAV L++ PT+AS PH IAN K ++ ++ T+ KEA IKEY+KDP+
Sbjct: 214 KFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPS 273
Query: 367 KF---ASTTXXXXXXXXXXXXXXXXXXXSES-ESDGSIGMGLFD 486
KF AS + SES E D +G GLFD
Sbjct: 274 KFAAAASASAAPAAGGATEKKEEAKKPESESEEEDDDMGFGLFD 317
>sp|O04204|RLA0A_ARATH 60S acidic ribosomal protein P0-A
Length = 317
Score = 126 bits (316), Expect = 3e-29
Identities = 65/160 (40%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Frame = +1
Query: 7 IINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDRTEDDIWR 186
II V+LIK GD V SEA LL L I PF YGL ++ +Y+NGS ++P+ L+ TEDD+
Sbjct: 157 IITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVE 216
Query: 187 GFMESTQKVAAVSLALNKPTLASGPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPT 366
F + A+SLA++ PT+A+ PH+ N K V+ +++ T+Y+ +AE +KE+LKDPT
Sbjct: 217 KFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPT 276
Query: 367 KFA-STTXXXXXXXXXXXXXXXXXXXSESESDGSIGMGLF 483
KFA + + ESDG +G LF
Sbjct: 277 KFAVAVAAPVSGESGGAVVAVAVEEEAAEESDGDMGFDLF 316
>sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E)
Length = 319
Score = 126 bits (316), Expect = 3e-29
Identities = 74/166 (44%), Positives = 92/166 (55%), Gaps = 6/166 (3%)
Frame = +1
Query: 7 IINDVDLIKAGDIVKQSEAQLLQMLK---IFPFQYGLKIQQIYENGSCYSPDALDRTEDD 177
I++DV LIK GD V SEA LL ML I PF YGL IQQ+Y+NGS YSP+ LD TED
Sbjct: 154 ILSDVQLIKPGDKVGASEATLLNMLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDA 213
Query: 178 IWRGFMESTQKVAAVSLALNKPTLASGPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLK 357
+ + F++ + +A+V L + PTLAS PH I N K V+ ++V TDY AE +K YL
Sbjct: 214 LHKRFLKGVRNIASVCLQIGYPTLASIPHTIINGYKRVLAVTVETDYTFPLAEKVKAYLA 273
Query: 358 DPTKF---ASTTXXXXXXXXXXXXXXXXXXXSESESDGSIGMGLFD 486
DPT F A ESD +G GLFD
Sbjct: 274 DPTAFAVAAPVAAATEQKSAAPAAKEEAPKEDSEESDEDMGFGLFD 319
>sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 125 bits (315), Expect = 4e-29
Identities = 72/164 (43%), Positives = 91/164 (55%), Gaps = 4/164 (2%)
Frame = +1
Query: 7 IINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDRTEDDIWR 186
I++DV LIK GD V SEA LL ML I PF +GL IQQ+++NGS YSP+ LD TE +
Sbjct: 154 ILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYSPEVLDITEQALHT 213
Query: 187 GFMESTQKVAAVSLALNKPTLASGPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPT 366
F+E + VA+V L + PT+AS PH I N K V+ LSV TDY AE +K +L DP+
Sbjct: 214 RFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPS 273
Query: 367 KFAS----TTXXXXXXXXXXXXXXXXXXXSESESDGSIGMGLFD 486
FA+ ESD +G GLFD
Sbjct: 274 AFAAAAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD 317
>sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0
Length = 320
Score = 125 bits (315), Expect = 4e-29
Identities = 69/164 (42%), Positives = 92/164 (56%), Gaps = 4/164 (2%)
Frame = +1
Query: 7 IINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDRTEDDIWR 186
II V+LI+ GD V SEA LL L I PF YGL + +Y+NGS +SP+ LD TEDD+
Sbjct: 157 IITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIG 216
Query: 187 GFMESTQKVAAVSLALNKPTLASGPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPT 366
F V ++SLA++ PTLA+ PH+ N K V+ ++V TDY+ EA+ +KEYLKDP+
Sbjct: 217 KFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPS 276
Query: 367 KFASTTXXXXXXXXXXXXXXXXXXXSE----SESDGSIGMGLFD 486
KFA + ESD +G LFD
Sbjct: 277 KFAVAAVAAPAAASGAPAAAAKEEEKKEEPAEESDDDMGFSLFD 320
>sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E)
Length = 316
Score = 125 bits (314), Expect = 6e-29
Identities = 69/163 (42%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Frame = +1
Query: 7 IINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDRTEDDIWR 186
I++DV LIK GD V SEA LL ML I PF +GL IQQ+++NGS Y+P+ LD TE+ + +
Sbjct: 154 ILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHK 213
Query: 187 GFMESTQKVAAVSLALNKPTLASGPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPT 366
F+E + VA+V L + PT+AS PH I N K V+ ++V TDY AE +K +L DP+
Sbjct: 214 RFLEGVRNVASVCLQIGYPTIASVPHSIVNGYKRVLAVAVETDYTFPLAEKVKAFLADPS 273
Query: 367 KF---ASTTXXXXXXXXXXXXXXXXXXXSESESDGSIGMGLFD 486
F A ESD +G GLFD
Sbjct: 274 AFVAAAPVVVETAAPAAAAAPAKEAPKEESEESDEDMGFGLFD 316
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,363,522
Number of Sequences: 369166
Number of extensions: 976227
Number of successful extensions: 2705
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2685
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3304927425
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)