Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_L16
(557 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P91924|ARF_DUGJA ADP-ribosylation factor 223 2e-58
sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1 204 1e-52
sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1) >gi|... 202 5e-52
sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regener... 202 5e-52
sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1 >gi|51316981... 202 6e-52
sp|P51643|ARF1_XENLA ADP-ribosylation factor 1 202 6e-52
sp|P84082|ARF2_RAT ADP-ribosylation factor 2 >gi|51316991|s... 199 5e-51
sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1 198 7e-51
sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1 196 2e-50
sp|P34728|ARF_CRYNE ADP-ribosylation factor 195 7e-50
>sp|P91924|ARF_DUGJA ADP-ribosylation factor
Length = 183
Score = 223 bits (569), Expect = 2e-58
Identities = 108/108 (100%), Positives = 108/108 (100%)
Frame = +1
Query: 1 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMN 180
PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMN
Sbjct: 76 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMN 135
Query: 181 PAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK 324
PAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK
Sbjct: 136 PAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK 183
>sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1
Length = 181
Score = 204 bits (519), Expect = 1e-52
Identities = 99/106 (93%), Positives = 100/106 (94%)
Frame = +1
Query: 1 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMN 180
PLWRHYFQNTQGLIFVVDSNDRERV EAREELMRML EDELRDAVLLVFANKQDLP AMN
Sbjct: 76 PLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMN 135
Query: 181 PAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 318
AE+TDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLS LKNRS
Sbjct: 136 AAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181
>sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1)
sp|P61209|ARF1_DROME ADP-ribosylation factor 1
Length = 182
Score = 202 bits (514), Expect = 5e-52
Identities = 96/107 (89%), Positives = 101/107 (94%)
Frame = +1
Query: 1 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMN 180
PLWRHYFQNTQGLIFVVDSNDRER+ EAREELMRML EDELRDAVLL+FANKQDLPNAMN
Sbjct: 76 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMN 135
Query: 181 PAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSK 321
AEITDKLGLHSLRNR+WYIQATCATSGDGLYEGLDWLS LKN ++
Sbjct: 136 AAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNANR 182
>sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regeneration-related protein
LRRG202)
sp|P61205|ARF3_MOUSE ADP-ribosylation factor 3
sp|P61207|ARF3_FUGRU ADP-ribosylation factor 3
sp|Q5R5P7|ARF3_PONPY ADP-ribosylation factor 3
sp|P61204|ARF3_HUMAN ADP-ribosylation factor 3
Length = 181
Score = 202 bits (514), Expect = 5e-52
Identities = 97/105 (92%), Positives = 101/105 (96%)
Frame = +1
Query: 1 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMN 180
PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAVLLVFANKQDLPNAMN
Sbjct: 76 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 135
Query: 181 PAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 315
AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWL+ LKN+
Sbjct: 136 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1
sp|P84079|ARF1_RAT ADP-ribosylation factor 1
sp|P84078|ARF1_MOUSE ADP-ribosylation factor 1
sp|P84077|ARF1_HUMAN ADP-ribosylation factor 1
sp|P84080|ARF1_BOVIN ADP-ribosylation factor 1
Length = 181
Score = 202 bits (513), Expect = 6e-52
Identities = 97/105 (92%), Positives = 101/105 (96%)
Frame = +1
Query: 1 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMN 180
PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAVLLVFANKQDLPNAMN
Sbjct: 76 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 135
Query: 181 PAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 315
AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS L+N+
Sbjct: 136 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>sp|P51643|ARF1_XENLA ADP-ribosylation factor 1
Length = 181
Score = 202 bits (513), Expect = 6e-52
Identities = 97/105 (92%), Positives = 101/105 (96%)
Frame = +1
Query: 1 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMN 180
PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAVLLVFANKQDLPNAMN
Sbjct: 76 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 135
Query: 181 PAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 315
AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS L+N+
Sbjct: 136 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>sp|P84082|ARF2_RAT ADP-ribosylation factor 2
sp|Q8BSL7|ARF2_MOUSE ADP-ribosylation factor 2
sp|P84081|ARF2_BOVIN ADP-ribosylation factor 2
Length = 181
Score = 199 bits (505), Expect = 5e-51
Identities = 96/105 (91%), Positives = 98/105 (93%)
Frame = +1
Query: 1 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMN 180
PLWRHYFQNTQGLIFVVDSNDRERVNEAREEL RML EDELRDAVLLVF NKQDLPNAMN
Sbjct: 76 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAMN 135
Query: 181 PAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 315
AEITDKLGLHSLR R+WYIQATCATSGDGLYEGLDWLS LKN+
Sbjct: 136 AAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
>sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1
Length = 180
Score = 198 bits (504), Expect = 7e-51
Identities = 93/105 (88%), Positives = 100/105 (95%)
Frame = +1
Query: 1 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMN 180
PLWRHYFQNTQG+IFVVDSNDRER++EA EEL RMLNEDELRDA+LLVFANKQDLPNAMN
Sbjct: 76 PLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMN 135
Query: 181 PAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 315
AEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLST LKN+
Sbjct: 136 AAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKNQ 180
>sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1
Length = 197
Score = 196 bits (499), Expect = 2e-50
Identities = 94/110 (85%), Positives = 100/110 (90%)
Frame = +1
Query: 1 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMN 180
PLWRHYFQNTQGLIFVVDSNDR+RVNEAREELMRML EDELRDAVLLVFANKQDLPNAMN
Sbjct: 76 PLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 135
Query: 181 PAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK*N 330
AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS ++N+ N
Sbjct: 136 AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQKANCN 185
>sp|P34728|ARF_CRYNE ADP-ribosylation factor
Length = 182
Score = 195 bits (495), Expect = 7e-50
Identities = 92/106 (86%), Positives = 98/106 (92%)
Frame = +1
Query: 1 PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMN 180
PLWRHYFQNTQG+IFVVDSNDRER+ EAREEL RML+EDELRDA+LLVFANKQDLPNAMN
Sbjct: 76 PLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAMN 135
Query: 181 PAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 318
AEITDKLGLHSLR RSWYIQA CATSGDGLYEGL+WLS LK +S
Sbjct: 136 AAEITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSANLKRKS 181
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,109,053
Number of Sequences: 369166
Number of extensions: 893986
Number of successful extensions: 2395
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2375
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3980545740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)