Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_L01
(758 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B (Microtubu... 241 2e-63
sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B (Microtubu... 241 2e-63
sp|P46871|KRP95_STRPU Kinesin-II 95 kDa subunit (KRP-85/95 ... 233 3e-61
sp|P46872|KRP85_STRPU Kinesin-II 85 kDa subunit (KRP-85/95 ... 213 5e-55
sp|P28741|KIF3A_MOUSE Kinesin-like protein KIF3A (Microtubu... 209 6e-54
sp|Q9Y496|KIF3A_HUMAN Kinesin-like protein KIF3A (Microtubu... 209 6e-54
sp|P46873|OSM3_CAEEL Osmotic avoidance abnormal protein 3 (... 206 6e-53
sp|O35066|KIF3C_MOUSE Kinesin-like protein KIF3C 205 9e-53
sp|O55165|KIF3C_RAT Kinesin-like protein KIF3C 205 1e-52
sp|Q99PW8|KIF17_MOUSE Kinesin-like protein KIF17 (MmKIF17) 204 2e-52
>sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B (Microtubule plus end-directed kinesin
motor 3B) (HH0048)
Length = 747
Score = 241 bits (614), Expect = 2e-63
Identities = 137/252 (54%), Positives = 162/252 (64%)
Frame = +2
Query: 2 DLAGSERQSKTLSEGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS 181
DLAGSERQ+KT ++GERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS
Sbjct: 245 DLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS 304
Query: 182 LGGNAKTVMVANIGPASYNYDETTNTLRYANRAKNIKNKPRINEDPKDALLREYQDKIEK 361
LGGNAKTVMVAN+GPASYN +ET TLRYANRAKNIKNKPR+NEDPKDALLRE+Q++I +
Sbjct: 305 LGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREFQEEIAR 364
Query: 362 LKNMLEHKETXXXXXXXXXXXXXXXINADGTTVNDSGSDMNXXXXXXANAQAYHQQKMAE 541
LK LE K + G + G + + Y +++ +
Sbjct: 365 LKAQLE-KRSIGRRKRREKRREGGGSGGGGEEEEEEGEE---GEEEGDDKDDYWREQQEK 420
Query: 542 LDEEKRAIMNDRTLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKTMESKLLRGDKD 721
L+ EKRAI+ D +L+ IK MESKLL G K+
Sbjct: 421 LEIEKRAIVEDHSLVAEEKMRLLKEKEKKMEDLRREKDAAEMLGAKIKAMESKLLVGGKN 480
Query: 722 IAQHTREQEEAL 757
I HT EQ++ L
Sbjct: 481 IVDHTNEQQKIL 492
>sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B (Microtubule plus end-directed kinesin
motor 3B)
Length = 747
Score = 241 bits (614), Expect = 2e-63
Identities = 137/252 (54%), Positives = 162/252 (64%)
Frame = +2
Query: 2 DLAGSERQSKTLSEGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS 181
DLAGSERQ+KT ++GERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS
Sbjct: 245 DLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS 304
Query: 182 LGGNAKTVMVANIGPASYNYDETTNTLRYANRAKNIKNKPRINEDPKDALLREYQDKIEK 361
LGGNAKTVMVAN+GPASYN +ET TLRYANRAKNIKNKPR+NEDPKDALLRE+Q++I +
Sbjct: 305 LGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREFQEEIAR 364
Query: 362 LKNMLEHKETXXXXXXXXXXXXXXXINADGTTVNDSGSDMNXXXXXXANAQAYHQQKMAE 541
LK LE K + G + G + + Y +++ +
Sbjct: 365 LKAQLE-KRSIGRRKRREKRREGGGSGGGGEEEEEEGEE---GEEDGDDKDDYWREQQEK 420
Query: 542 LDEEKRAIMNDRTLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKTMESKLLRGDKD 721
L+ EKRAI+ D +L+ IK MESKLL G K+
Sbjct: 421 LEIEKRAIVEDHSLVAEEKMRLLKEKEKKMEDLRREKDAAEMLGAKIKAMESKLLVGGKN 480
Query: 722 IAQHTREQEEAL 757
I HT EQ++ L
Sbjct: 481 IVDHTNEQQKIL 492
>sp|P46871|KRP95_STRPU Kinesin-II 95 kDa subunit (KRP-85/95 95 kDa subunit)
Length = 742
Score = 233 bits (595), Expect = 3e-61
Identities = 133/254 (52%), Positives = 160/254 (62%), Gaps = 2/254 (0%)
Frame = +2
Query: 2 DLAGSERQSKTLSEGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS 181
DLAGSERQ+KT + G+RLKEATKINLSLSALGNVISALVDGKS+HIPYRDSKLTRLLQDS
Sbjct: 244 DLAGSERQAKTGATGDRLKEATKINLSLSALGNVISALVDGKSSHIPYRDSKLTRLLQDS 303
Query: 182 LGGNAKTVMVANIGPASYNYDETTNTLRYANRAKNIKNKPRINEDPKDALLREYQDKIEK 361
LGGNAKTVMVAN+GPASYN+DET TLRYANRAKNIKNKP+INEDPKDALLRE+Q++I +
Sbjct: 304 LGGNAKTVMVANMGPASYNFDETITTLRYANRAKNIKNKPKINEDPKDALLREFQEEISR 363
Query: 362 LKNMLEHKETXXXXXXXXXXXXXXXINADG--TTVNDSGSDMNXXXXXXANAQAYHQQKM 535
LK L+ K D + G +M + + +++
Sbjct: 364 LKQALDKKGPSDGRKKGKKRKPGEQGGDDDIEDETEEEGDEM--------DEEEMYKESQ 415
Query: 536 AELDEEKRAIMNDRTLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKTMESKLLRGD 715
+L+EEK IM ++++I IK MESKLL G
Sbjct: 416 QKLEEEKEKIMANQSMIAEEKQKLLSEVQKRQGEIKKEHQQKEMLEGKIKAMESKLLVGG 475
Query: 716 KDIAQHTREQEEAL 757
K I HT EQ+ +
Sbjct: 476 KSIVDHTNEQQRKI 489
>sp|P46872|KRP85_STRPU Kinesin-II 85 kDa subunit (KRP-85/95 85 kDa subunit)
Length = 699
Score = 213 bits (542), Expect = 5e-55
Identities = 123/252 (48%), Positives = 148/252 (58%)
Frame = +2
Query: 2 DLAGSERQSKTLSEGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS 181
DLAGSERQ+KT + G+RLKEATKINLSLS LGNVIS+LVDGKSTHIPYR+SKLTRLLQDS
Sbjct: 247 DLAGSERQTKTGATGQRLKEATKINLSLSTLGNVISSLVDGKSTHIPYRNSKLTRLLQDS 306
Query: 182 LGGNAKTVMVANIGPASYNYDETTNTLRYANRAKNIKNKPRINEDPKDALLREYQDKIEK 361
LGGNAKTVM ANIGPA YNYDET +TLRYANRAKNIKNK +INEDPKDALLRE+Q +IE+
Sbjct: 307 LGGNAKTVMCANIGPAEYNYDETISTLRYANRAKNIKNKAKINEDPKDALLREFQKEIEE 366
Query: 362 LKNMLEHKETXXXXXXXXXXXXXXXINADGTTVNDSGSDMNXXXXXXANAQAYHQQKMAE 541
LK + A V N A Q+K
Sbjct: 367 LKKQISESGEGLDDDEESGSEESGDEEAGEGGVKKKRKGKNPKRKLSPEIMAAMQKK--- 423
Query: 542 LDEEKRAIMNDRTLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKTMESKLLRGDKD 721
+DEEK+A+ + ++ + ++ KL+ G D
Sbjct: 424 IDEEKKALEEKKDMVEEDRNTVHRELQRRESELHKAQDDQKILNEKLNAIQKKLIVGGVD 483
Query: 722 IAQHTREQEEAL 757
+ + EQE+ L
Sbjct: 484 LLAKSEEQEQLL 495
>sp|P28741|KIF3A_MOUSE Kinesin-like protein KIF3A (Microtubule plus end-directed kinesin
motor 3A)
Length = 701
Score = 209 bits (532), Expect = 6e-54
Identities = 105/129 (81%), Positives = 117/129 (90%)
Frame = +2
Query: 2 DLAGSERQSKTLSEGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS 181
DLAGSERQ+KT + G+RLKEATKINLSLS LGNVISALVDGKSTH+PYR+SKLTRLLQDS
Sbjct: 250 DLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDS 309
Query: 182 LGGNAKTVMVANIGPASYNYDETTNTLRYANRAKNIKNKPRINEDPKDALLREYQDKIEK 361
LGGN+KT+M ANIGPA YNYDET +TLRYANRAKNIKNK RINEDPKDALLR++Q +IE+
Sbjct: 310 LGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEE 369
Query: 362 LKNMLEHKE 388
LK LE E
Sbjct: 370 LKKKLEEGE 378
>sp|Q9Y496|KIF3A_HUMAN Kinesin-like protein KIF3A (Microtubule plus end-directed kinesin
motor 3A)
Length = 702
Score = 209 bits (532), Expect = 6e-54
Identities = 105/129 (81%), Positives = 117/129 (90%)
Frame = +2
Query: 2 DLAGSERQSKTLSEGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS 181
DLAGSERQ+KT + G+RLKEATKINLSLS LGNVISALVDGKSTH+PYR+SKLTRLLQDS
Sbjct: 250 DLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDS 309
Query: 182 LGGNAKTVMVANIGPASYNYDETTNTLRYANRAKNIKNKPRINEDPKDALLREYQDKIEK 361
LGGN+KT+M ANIGPA YNYDET +TLRYANRAKNIKNK RINEDPKDALLR++Q +IE+
Sbjct: 310 LGGNSKTMMCANIGPADYNYDETISTLRYANRAKNIKNKARINEDPKDALLRQFQKEIEE 369
Query: 362 LKNMLEHKE 388
LK LE E
Sbjct: 370 LKKKLEEGE 378
>sp|P46873|OSM3_CAEEL Osmotic avoidance abnormal protein 3 (Kinesin-like protein osm-3)
Length = 699
Score = 206 bits (524), Expect = 6e-53
Identities = 103/126 (81%), Positives = 116/126 (92%)
Frame = +2
Query: 2 DLAGSERQSKTLSEGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS 181
DLAGSERQSKT + G+RLKEATKINLSLSALGNVISALVDGKS HIPYRDSKLTRLLQDS
Sbjct: 232 DLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSKHIPYRDSKLTRLLQDS 291
Query: 182 LGGNAKTVMVANIGPASYNYDETTNTLRYANRAKNIKNKPRINEDPKDALLREYQDKIEK 361
LGGN KT+M+A + P+S NYDET +TLRYANRAKNIKNKP INEDPKDALLREYQ++I +
Sbjct: 292 LGGNTKTIMIACVSPSSDNYDETLSTLRYANRAKNIKNKPTINEDPKDALLREYQEEIAR 351
Query: 362 LKNMLE 379
LK+M++
Sbjct: 352 LKSMVQ 357
>sp|O35066|KIF3C_MOUSE Kinesin-like protein KIF3C
Length = 796
Score = 205 bits (522), Expect = 9e-53
Identities = 122/268 (45%), Positives = 155/268 (57%), Gaps = 18/268 (6%)
Frame = +2
Query: 8 AGSERQSKTLSEGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLG 187
+GS S + S GER KEA+KINLSLSALGNVI+AL +STHIPYRDSKLTRLLQDSLG
Sbjct: 274 SGSGSASGSASSGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLG 333
Query: 188 GNAKTVMVANIGPASYNYDETTNTLRYANRAKNIKNKPRINEDPKDALLREYQDKIEKLK 367
GNAKT+MVA +GPAS++YDE+ +TLR+ANRAKNIKNKPR+NEDPKD LLRE+Q++I +LK
Sbjct: 334 GNAKTIMVATLGPASHSYDESLSTLRFANRAKNIKNKPRVNEDPKDTLLREFQEEIARLK 393
Query: 368 NMLEHKETXXXXXXXXXXXXXXXINA-----DGTTVN----DSGSDMN---------XXX 493
LE K ++A +G+ + + D N
Sbjct: 394 AQLEKKGMLGKRPRRKSSRRKKAVSAPAGYPEGSVIEAWVAEEEDDNNNNHHPPQPILEA 453
Query: 494 XXXANAQAYHQQKMAELDEEKRAIMNDRTLIXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 673
N + Y Q + L+EEK AI +DR+L+
Sbjct: 454 ALEKNMENYLQDQKERLEEEKAAIQDDRSLVSEEKQKLLEEKEKMLEDLRREQQATELLA 513
Query: 674 XXIKTMESKLLRGDKDIAQHTREQEEAL 757
K MESKLL G ++I HT EQ++ L
Sbjct: 514 AKYKAMESKLLIGGRNIMDHTNEQQKML 541
>sp|O55165|KIF3C_RAT Kinesin-like protein KIF3C
Length = 796
Score = 205 bits (521), Expect = 1e-52
Identities = 127/296 (42%), Positives = 157/296 (53%), Gaps = 44/296 (14%)
Frame = +2
Query: 2 DLAGSERQSK--------------------------TLSEGERLKEATKINLSLSALGNV 103
DLAGSERQ+K + S GER KEA+KINLSLSALGNV
Sbjct: 246 DLAGSERQNKAGPNTPGGPATQSTAGGGGGGGGTSGSGSSGERPKEASKINLSLSALGNV 305
Query: 104 ISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANIGPASYNYDETTNTLRYANRAK 283
I+AL +STHIPYRDSKLTRLLQDSLGGNAKT+MVA +GPAS++YDE+ +TLR+ANRAK
Sbjct: 306 IAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRAK 365
Query: 284 NIKNKPRINEDPKDALLREYQDKIEKLKNMLEHKETXXXXXXXXXXXXXXXINA------ 445
NIKNKPR+NEDPKD LLRE+Q++I +LK LE K ++A
Sbjct: 366 NIKNKPRVNEDPKDTLLREFQEEIARLKAQLEKKGMLGKRPRRKSSRRKKAVSAPAGYPE 425
Query: 446 ------------DGTTVNDSGSDMNXXXXXXANAQAYHQQKMAELDEEKRAIMNDRTLIX 589
D N N + Y Q++ L+EEK AI +DR+L+
Sbjct: 426 GAVIEAWVAEEEDDNNNNHRPPQPTLEAALEKNMENYLQEQKERLEEEKAAIQDDRSLVS 485
Query: 590 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIKTMESKLLRGDKDIAQHTREQEEAL 757
K MESKLL G ++I HT EQ++ L
Sbjct: 486 EEKQKLLEEKEKMLEDLKREQQATELLAAKYKAMESKLLIGGRNIMDHTNEQQKML 541
>sp|Q99PW8|KIF17_MOUSE Kinesin-like protein KIF17 (MmKIF17)
Length = 1038
Score = 204 bits (519), Expect = 2e-52
Identities = 104/125 (83%), Positives = 114/125 (91%)
Frame = +2
Query: 2 DLAGSERQSKTLSEGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS 181
DLAGSERQSKT + GERLKEATKINLSLSALGNVISALVDG+ HIPYRDSKLTRLLQDS
Sbjct: 240 DLAGSERQSKTGATGERLKEATKINLSLSALGNVISALVDGRCKHIPYRDSKLTRLLQDS 299
Query: 182 LGGNAKTVMVANIGPASYNYDETTNTLRYANRAKNIKNKPRINEDPKDALLREYQDKIEK 361
LGGN KT+MVA + PA NYDET +TLRYANRAKNIKNKPRINEDPKDALLREYQ++I++
Sbjct: 300 LGGNTKTLMVACLSPADNNYDETLSTLRYANRAKNIKNKPRINEDPKDALLREYQEEIKR 359
Query: 362 LKNML 376
LK +L
Sbjct: 360 LKAIL 364
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,571,239
Number of Sequences: 369166
Number of extensions: 914319
Number of successful extensions: 2941
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2848
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)