Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_K14
(429 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UJ70|NAGK_HUMAN N-acetylglucosamine kinase (GlcNAc kin... 67 1e-11
sp|Q9QZ08|NAGK_MOUSE N-acetylglucosamine kinase (GlcNAc kin... 65 8e-11
sp|Q970U8|CARA_SULTO Carbamoyl-phosphate synthase small cha... 30 2.1
sp|P37651|GUN_ECOLI Endoglucanase precursor (Endo-1,4-beta-... 29 4.7
sp|Q59968|CARA_SULSO Carbamoyl-phosphate synthase small cha... 29 4.7
sp|Q10778|PP21_MYCTU Hypothetical PPE-family protein PPE21 29 4.7
sp|P25106|RDC1_HUMAN G-protein coupled receptor RDC1 homolo... 29 4.7
sp|Q8X5L9|GUN_ECO57 Endoglucanase precursor (Endo-1,4-beta-... 29 4.7
sp|Q9NR63|CP26B_HUMAN Cytochrome P450 26B1 (P450 26A2) (P45... 28 8.1
sp|Q09614|PTC1_CAEEL Patched protein homolog 1 28 8.1
>sp|Q9UJ70|NAGK_HUMAN N-acetylglucosamine kinase (GlcNAc kinase)
Length = 344
Score = 67.4 bits (163), Expect = 1e-11
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Frame = +2
Query: 11 ANMCPLLAQAAENGDKFCIDLFYEAGYILARLVATMARHCEPAILENPEGLPVVCVGGVW 190
A C +A+ A+ GD +F +AG +L R + + +P + + GLP++CVG VW
Sbjct: 214 AGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVW 273
Query: 191 GSWNLLESGFIDGLKPKYE---NDIVIKKICLKRLIVTAAYGAAIIASELGHSPIKPDYS 361
SW LL+ GF+ L E + +K +A GA++ A +GH + DYS
Sbjct: 274 KSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGARHIGHL-LPMDYS 332
Query: 362 STFCVFF 382
+ F+
Sbjct: 333 ANAIAFY 339
>sp|Q9QZ08|NAGK_MOUSE N-acetylglucosamine kinase (GlcNAc kinase)
Length = 343
Score = 64.7 bits (156), Expect = 8e-11
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Frame = +2
Query: 11 ANMCPLLAQAAENGDKFCIDLFYEAGYILARLVATMARHCEPAILENPEGLPVVCVGGVW 190
A C +A+ A GD +F +AG +L R V + +P + + GLP++CVG VW
Sbjct: 214 AGFCQKIAEGAHQGDPLSRYIFRKAGEMLGRHVVAVLPEIDPVLFQGELGLPILCVGSVW 273
Query: 191 GSWNLLESGFIDGLKPKYENDI--VIKKICLKRLIVTAAYGAAII-ASELG-HSPIKPDY 358
SW LL+ GF+ L E L +L ++A G A + A +G H P+ DY
Sbjct: 274 KSWELLKEGFLLALTLGREQQAQNSFSSFTLMKLRHSSALGGASLGARHIGYHLPM--DY 331
Query: 359 SSTFCVFF 382
S F+
Sbjct: 332 SINAIAFY 339
>sp|Q970U8|CARA_SULTO Carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate
synthetase glutamine chain)
Length = 372
Score = 30.0 bits (66), Expect = 2.1
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +2
Query: 170 VCVGGVWGSWNLLESGFIDGLKPKYENDIVIKKICLKRLIVTAAYGAAIIASELGHSPI- 346
V G G+ NLL+ I+ K E I I ICL + T A G + + GH I
Sbjct: 229 VVFGNGPGNPNLLQE-VIENFKELTEYKIPILGICLGHQVATLAMGGKVNKMKFGHRAIN 287
Query: 347 KP--DYSSTFC 373
KP D SS C
Sbjct: 288 KPVIDISSNKC 298
>sp|P37651|GUN_ECOLI Endoglucanase precursor (Endo-1,4-beta-glucanase) (Cellulase)
(Carboxymethylcellulase) (CMCase)
Length = 368
Score = 28.9 bits (63), Expect = 4.7
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 179 GGVWGSWNLLESGFIDGLKPKYENDI---VIKKICLKRLIVTAAYGAAIIASELG 334
G VW +W+LLE+G + K + DI ++K+I + ++ G+ ++ ++G
Sbjct: 117 GDVWMAWSLLEAGRL--WKEQRYTDIGSALLKRIAREEVVTVPGLGSMLLPGKVG 169
>sp|Q59968|CARA_SULSO Carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate
synthetase glutamine chain)
Length = 367
Score = 28.9 bits (63), Expect = 4.7
Identities = 29/90 (32%), Positives = 40/90 (44%)
Frame = +2
Query: 77 YEAGYILARLVATMARHCEPAILENPEGLPVVCVGGVWGSWNLLESGFIDGLKPKYENDI 256
Y+ G+ + R+ + + I NP+G +V G G+ NLLE+ I E I
Sbjct: 199 YKRGFSIVRVPCSFS--ASKIIEYNPKG--IVFSNGP-GNPNLLENQ-IKTFSELVEYKI 252
Query: 257 VIKKICLKRLIVTAAYGAAIIASELGHSPI 346
I ICL I T A G I + GH I
Sbjct: 253 PILGICLGHQIATLALGGKIKKMKFGHRAI 282
>sp|Q10778|PP21_MYCTU Hypothetical PPE-family protein PPE21
Length = 678
Score = 28.9 bits (63), Expect = 4.7
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = -1
Query: 192 PHTPPTQTTGRPSGFSRIAGSQCLAIVATSLAKI*PAS*NKSMQNLSPFSAACANNGHI 16
P TP P G IAG L + ++ AS N + NL F+ AN G +
Sbjct: 167 PFTPSPSAAATPGGAVIIAGFPFLDLGNVTIGGFNLASGNLGLGNLGSFNPGSANTGSV 225
>sp|P25106|RDC1_HUMAN G-protein coupled receptor RDC1 homolog (Chemokine orphan receptor
1) (G-protein coupled receptor 159)
Length = 362
Score = 28.9 bits (63), Expect = 4.7
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Frame = -1
Query: 339 EWPSSEAIIAAPYAAVTINLFKQIFLIT-------ISFSYFGLRPS 223
+WP E + +INLF IF +T +S +YF PS
Sbjct: 109 QWPMGELTCKVTHLIFSINLFSSIFFLTCMSVDRYLSITYFTNTPS 154
>sp|Q8X5L9|GUN_ECO57 Endoglucanase precursor (Endo-1,4-beta-glucanase) (Cellulase)
(Carboxymethylcellulase) (CMCase)
Length = 368
Score = 28.9 bits (63), Expect = 4.7
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +2
Query: 179 GGVWGSWNLLESGFIDGLKPKYENDI---VIKKICLKRLIVTAAYGAAIIASELG 334
G VW +W+LLE+G + K + DI ++K+I + ++ G+ ++ ++G
Sbjct: 117 GDVWMAWSLLEAGRL--WKEQRYTDIGSALLKRIAREEVVTVPGLGSMLLPGKVG 169
>sp|Q9NR63|CP26B_HUMAN Cytochrome P450 26B1 (P450 26A2) (P450 retinoic acid-inactivating
2) (P450RAI-2) (Retinoic-acid metabolizing cytochrome)
Length = 512
Score = 28.1 bits (61), Expect = 8.1
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 101 RLVATMARHCEPAILENPEGLPVVCVGGVWGSWNLLESGFIDGLKPKYEN 250
R AT + C+ I + G P++ G G W L SGF + KY N
Sbjct: 36 RWAATRDKSCKLPIPKGSMGFPLI---GETGHWLLQGSGFQSSRREKYGN 82
>sp|Q09614|PTC1_CAEEL Patched protein homolog 1
Length = 1405
Score = 28.1 bits (61), Expect = 8.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 300 AAVTINLFKQIFLITISFSYFGLRPSINPDSNKFQLPHTPP 178
A + I + + L+ + S+FG R I+P K L PP
Sbjct: 1310 ALICIGIINGLILLPVLLSWFGPRREISPTGGKTTLTLPPP 1350
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,249,584
Number of Sequences: 369166
Number of extensions: 907947
Number of successful extensions: 2360
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2360
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2095022160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)