Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_K09
(776 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52233|THIO_THIFE Thioredoxin (TRX) 53 8e-07
sp|P0AA25|THIO_ECOLI Thioredoxin 1 (TRX1) (TRX) >gi|7636356... 50 9e-06
sp|P57653|THIO_BUCAI Thioredoxin (TRX) 49 2e-05
sp|Q8TFM8|THIO_FUSCU Thioredoxin-like protein (Minor allerg... 49 2e-05
sp|P07887|THIO2_CORNE Thioredoxin C-2 48 3e-05
sp|P42115|THIO_NEUCR Thioredoxin 48 3e-05
sp|P52232|THIO1_SYNY3 Thioredoxin-like protein slr0233 47 6e-05
sp|P33636|THIO2_ECOLI Thioredoxin 2 (Protein-disulfide redu... 46 1e-04
sp|O51890|THIO_BUCAP Thioredoxin (TRX) 46 1e-04
sp|P52231|THIO_SYNY3 Thioredoxin (TRX) 46 1e-04
>sp|P52233|THIO_THIFE Thioredoxin (TRX)
Length = 108
Score = 53.1 bits (126), Expect = 8e-07
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Frame = +3
Query: 252 DRVIYFSDTSLNEELKKDSRVVWLMAFYNAWSPACINLAPIFAELSQNYGNEFLRFGKID 431
D ++Y SD S ++ K S+ V L+ F+ W C +API E++ Y + LR K +
Sbjct: 3 DAILYVSDDSFETDVLKSSKPV-LVDFWAEWCGPCKMIAPILEEIADEYADR-LRVAKFN 60
Query: 432 VSKNTEAAIKYKIDTTNWSTNLPTIILFKNGK-EVTRRPAVTLA 560
+ +N +Y I +PT++LFK GK E T+ A++ A
Sbjct: 61 IDENPNTPPQYAI------RGIPTLLLFKAGKLEATKVGALSKA 98
>sp|P0AA25|THIO_ECOLI Thioredoxin 1 (TRX1) (TRX)
sp|P0AA28|THIO_SALTY Thioredoxin 1 (TRX1) (TRX)
Length = 109
Score = 49.7 bits (117), Expect = 9e-06
Identities = 29/106 (27%), Positives = 54/106 (50%)
Frame = +3
Query: 252 DRVIYFSDTSLNEELKKDSRVVWLMAFYNAWSPACINLAPIFAELSQNYGNEFLRFGKID 431
D++I+ +D S + ++ K + L+ F+ W C +API E++ Y + L K++
Sbjct: 3 DKIIHLTDDSFDTDVLKADGAI-LVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLN 60
Query: 432 VSKNTEAAIKYKIDTTNWSTNLPTIILFKNGKEVTRRPAVTLAGKV 569
+ +N A KY I +PT++LFKNG+ + G++
Sbjct: 61 IDQNPGTAPKYGI------RGIPTLLLFKNGEVAATKVGALSKGQL 100
>sp|P57653|THIO_BUCAI Thioredoxin (TRX)
Length = 108
Score = 48.9 bits (115), Expect = 2e-05
Identities = 27/92 (29%), Positives = 52/92 (56%)
Frame = +3
Query: 252 DRVIYFSDTSLNEELKKDSRVVWLMAFYNAWSPACINLAPIFAELSQNYGNEFLRFGKID 431
+++I +D + E++ +S+ +L+ F+ W C LAPI E+S+ Y N+ + GK++
Sbjct: 2 NKIIELTDQNFEEQVL-NSKSFFLVDFWAQWCNPCKILAPILEEISKEYSNKVI-VGKLN 59
Query: 432 VSKNTEAAIKYKIDTTNWSTNLPTIILFKNGK 527
+ +N A Y I ++PT++LF N +
Sbjct: 60 IEENPNTAPVYSI------RSIPTLLLFNNSE 85
>sp|Q8TFM8|THIO_FUSCU Thioredoxin-like protein (Minor allergen Fus c 2)
Length = 121
Score = 48.5 bits (114), Expect = 2e-05
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Frame = +3
Query: 285 NEELKK--DSRVVWLMAFYNAWSPACINLAPIFAELSQNYG-NEFLRFGKIDVSKNTEAA 455
N+EL+K S ++ F+ W P C +AP++ +LS + + L F K++V +AA
Sbjct: 8 NDELQKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAA 67
Query: 456 IKYKIDTTNWSTNLPTIILFKNGKEVTRRPAVTLAG 563
+Y I T +PT + FK GK+V + G
Sbjct: 68 QQYGI------TAMPTFMFFKEGKQVAVNGQAVIKG 97
>sp|P07887|THIO2_CORNE Thioredoxin C-2
Length = 108
Score = 48.1 bits (113), Expect = 3e-05
Identities = 24/80 (30%), Positives = 44/80 (55%)
Frame = +3
Query: 303 DSRVVWLMAFYNAWSPACINLAPIFAELSQNYGNEFLRFGKIDVSKNTEAAIKYKIDTTN 482
D+ L+ F+ W C +AP+ ELS Y + ++ K+DV+ + A+KY I
Sbjct: 19 DAETPVLVDFWAGWCAPCKAIAPVLEELSNEYAGK-VKIVKVDVTSCEDTAVKYNI---- 73
Query: 483 WSTNLPTIILFKNGKEVTRR 542
N+P +++FK+G+ V ++
Sbjct: 74 --RNIPALLMFKDGEVVAQQ 91
>sp|P42115|THIO_NEUCR Thioredoxin
Length = 127
Score = 47.8 bits (112), Expect = 3e-05
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +3
Query: 330 FYNAWSPACINLAPIFAELSQNYG-NEFLRFGKIDVSKNTEAAIKYKIDTTNWSTNLPTI 506
FY W C +AP++A+ ++ + FL F KI+V + A Y++ +PT
Sbjct: 28 FYADWCGPCKAIAPMYAQFAKTFSIPNFLAFAKINVDSVQQVAQHYRVSA------MPTF 81
Query: 507 ILFKNGKEVTRRPAVTLAG 563
+ FKNGK+V +V + G
Sbjct: 82 LFFKNGKQVAVNGSVMIQG 100
>sp|P52232|THIO1_SYNY3 Thioredoxin-like protein slr0233
Length = 105
Score = 47.0 bits (110), Expect = 6e-05
Identities = 28/86 (32%), Positives = 45/86 (52%)
Frame = +3
Query: 321 LMAFYNAWSPACINLAPIFAELSQNYGNEFLRFGKIDVSKNTEAAIKYKIDTTNWSTNLP 500
L+ FY W C +API ++ + + ++ KID K A +Y+I + LP
Sbjct: 22 LVDFYATWCGPCQMMAPILEQVGSHLRQQ-IQVVKIDTDKYPAIATQYQIQS------LP 74
Query: 501 TIILFKNGKEVTRRPAVTLAGKVIQK 578
T++LFK G+ V R V A ++IQ+
Sbjct: 75 TLVLFKQGQPVHRMEGVQQAAQLIQQ 100
>sp|P33636|THIO2_ECOLI Thioredoxin 2 (Protein-disulfide reductase) (Disulfide reductase)
(Trx2)
Length = 139
Score = 46.2 bits (108), Expect = 1e-04
Identities = 30/95 (31%), Positives = 52/95 (54%)
Frame = +3
Query: 249 EDRVIYFSDTSLNEELKKDSRVVWLMAFYNAWSPACINLAPIFAELSQNYGNEFLRFGKI 428
+ VI + +L++ LK D VV + F+ W C N APIF +++Q + +RF K+
Sbjct: 34 DGEVINATGETLDKLLKDDLPVV--IDFWAPWCGPCRNFAPIFEDVAQERSGK-VRFVKV 90
Query: 429 DVSKNTEAAIKYKIDTTNWSTNLPTIILFKNGKEV 533
+ E + ++ I ++PTI++FKNG+ V
Sbjct: 91 NTEAERELSSRFGI------RSIPTIMIFKNGQVV 119
>sp|O51890|THIO_BUCAP Thioredoxin (TRX)
Length = 108
Score = 46.2 bits (108), Expect = 1e-04
Identities = 29/94 (30%), Positives = 52/94 (55%)
Frame = +3
Query: 252 DRVIYFSDTSLNEELKKDSRVVWLMAFYNAWSPACINLAPIFAELSQNYGNEFLRFGKID 431
+++I +D + +E+ + V L+ F+ W C LAPI E++Q Y N+ ++ GK++
Sbjct: 2 NKIIELTDQNFEKEVLEHKSFV-LVDFWAEWCNPCKILAPILEEIAQEYFNK-IKVGKLN 59
Query: 432 VSKNTEAAIKYKIDTTNWSTNLPTIILFKNGKEV 533
+ KN A Y I +P ++LF +G+EV
Sbjct: 60 IEKNPNTAPIYSI------RGIPALLLF-HGREV 86
>sp|P52231|THIO_SYNY3 Thioredoxin (TRX)
Length = 107
Score = 45.8 bits (107), Expect = 1e-04
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Frame = +3
Query: 270 SDTSLNEELKKDSRVVWLMAFYNAWSPACINLAPIFAELSQNYGNEFLRFGKIDVSKNTE 449
SD S E++ DS + L+ F+ W C +AP+ E+SQ Y + ++ K++ +N
Sbjct: 8 SDASFKEDVL-DSELPVLVDFWAPWCGPCRMVAPVVDEISQQYEGK-VKVVKLNTDENPN 65
Query: 450 AAIKYKIDTTNWSTNLPTIILFKNGKEVT----RRPAVTLAGKVIQKY 581
A +Y I ++PT+++FK G+ V P TLA ++KY
Sbjct: 66 TASQYGI------RSIPTLMIFKGGQRVDMVVGAVPKTTLA-STLEKY 106
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,916,312
Number of Sequences: 369166
Number of extensions: 1453941
Number of successful extensions: 3847
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3829
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7260540000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)