Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_K03
(876 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 59 2e-08
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 56 1e-07
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 56 1e-07
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 56 1e-07
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 56 1e-07
sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-sp... 55 2e-07
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 55 3e-07
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 55 3e-07
sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock doma... 55 3e-07
sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain... 55 3e-07
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 58.9 bits (141), Expect = 2e-08
Identities = 33/71 (46%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Frame = +2
Query: 8 KNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVT 175
K+GYGFI+ DD +D+FVH DGE+V FD+V+G KG EA NVT
Sbjct: 43 KSGYGFINRDD--TKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVT 100
Query: 176 GPNGGDVIGGK 208
GP G +V G K
Sbjct: 101 GPEGSNVQGSK 111
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 55.8 bits (133), Expect = 1e-07
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +2
Query: 8 KNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVT 175
+NGYGFI+ +D +D+FVH DGE V FD+V+G KG EA NVT
Sbjct: 47 RNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 104
Query: 176 GPNGGDVIGGK 208
GP G V G K
Sbjct: 105 GPEGVPVQGSK 115
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 55.8 bits (133), Expect = 1e-07
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +2
Query: 8 KNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVT 175
+NGYGFI+ +D +D+FVH DGE V FD+V+G KG EA NVT
Sbjct: 67 RNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 124
Query: 176 GPNGGDVIGGK 208
GP G V G K
Sbjct: 125 GPGGVPVQGSK 135
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 55.8 bits (133), Expect = 1e-07
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +2
Query: 8 KNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVT 175
+NGYGFI+ +D +D+FVH DGE V FD+V+G KG EA NVT
Sbjct: 69 RNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 126
Query: 176 GPNGGDVIGGK 208
GP G V G K
Sbjct: 127 GPGGVPVQGSK 137
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 55.8 bits (133), Expect = 1e-07
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +2
Query: 8 KNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVT 175
+NGYGFI+ +D +D+FVH DGE V FD+V+G KG EA NVT
Sbjct: 66 RNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 123
Query: 176 GPNGGDVIGGK 208
GP G V G K
Sbjct: 124 GPGGVPVQGSK 134
>sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-specific Y-box binding protein)
(Contrin) (MSY2 homolog)
Length = 364
Score = 55.5 bits (132), Expect = 2e-07
Identities = 33/75 (44%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = +2
Query: 8 KNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVT 175
+NGYGFI+ +D +D+FVH DGE V FD+V+G KG EA NVT
Sbjct: 104 RNGYGFINRND--TKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVT 161
Query: 176 GPNGGDVIGGKPYEP 220
GP GG + G Y P
Sbjct: 162 GP-GGVPVKGSRYAP 175
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 55.1 bits (131), Expect = 3e-07
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Frame = +2
Query: 8 KNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVT 175
+NGYGFI+ +D +D+FVH DGE V FD+V+G KG EA NVT
Sbjct: 93 RNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 150
Query: 176 GPNGGDVIGGK 208
GP+G V G +
Sbjct: 151 GPDGVPVEGSR 161
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 55.1 bits (131), Expect = 3e-07
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Frame = +2
Query: 8 KNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVT 175
+NGYGFI+ +D + +D+FVH DGE V FD+V+G KG EA NVT
Sbjct: 52 RNGYGFINRND--SKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVT 109
Query: 176 GPNGGDVIGGK 208
GP G V G +
Sbjct: 110 GPGGVPVKGSR 120
>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
DNA binding protein NF-GMB)
Length = 372
Score = 55.1 bits (131), Expect = 3e-07
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Frame = +2
Query: 8 KNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVT 175
+NGYGFI+ +D +D+FVH DGE V FD+V+G KG EA NVT
Sbjct: 101 RNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 158
Query: 176 GPNGGDVIGGK 208
GP+G V G +
Sbjct: 159 GPDGVPVEGSR 169
>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
protein YB2) (Y-box binding protein-A) (RYB-A)
Length = 361
Score = 55.1 bits (131), Expect = 3e-07
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Frame = +2
Query: 8 KNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGLEARNVT 175
+NGYGFI+ +D +D+FVH DGE V FD+V+G KG EA NVT
Sbjct: 93 RNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 150
Query: 176 GPNGGDVIGGK 208
GP+G V G +
Sbjct: 151 GPDGVPVEGSR 161
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,398,830
Number of Sequences: 369166
Number of extensions: 1307643
Number of successful extensions: 4178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3839
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)