Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_J19
(178 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8VEH8|XTP3B_MOUSE XTP3-transactivated gene B protein ho... 29 3.8
sp|Q58464|YA64_METJA Hypothetical acetyltransferase MJ1064 29 3.8
sp|Q5R8S4|XTP3B_PONPY XTP3-transactivated gene B protein ho... 29 3.8
>sp|Q8VEH8|XTP3B_MOUSE XTP3-transactivated gene B protein homolog precursor
Length = 483
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -2
Query: 84 NFSKLSD*NLIKSLFLSKSFCFHNSI 7
+ SKL+D LIK FLS S+CFH +
Sbjct: 325 HISKLTDDQLIKE-FLSGSYCFHGGV 349
>sp|Q58464|YA64_METJA Hypothetical acetyltransferase MJ1064
Length = 214
Score = 28.9 bits (63), Expect = 3.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -2
Query: 132 G*IFITIIKINQLKVHNFSKL 70
G I+++I IN LKVHNF K+
Sbjct: 30 GKIYLSIFGINPLKVHNFGKI 50
>sp|Q5R8S4|XTP3B_PONPY XTP3-transactivated gene B protein homolog precursor
Length = 483
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -2
Query: 84 NFSKLSD*NLIKSLFLSKSFCFHNSI 7
+ SKL+D LIK FLS S+CFH +
Sbjct: 325 HISKLTDDQLIKE-FLSGSYCFHGGV 349
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,652,303
Number of Sequences: 369166
Number of extensions: 199116
Number of successful extensions: 416
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 68,354,980
effective HSP length: 31
effective length of database: 62,628,195
effective search space used: 1690961265
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)